Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco7g01119 | ATGAGAGGTGGTGGTGGATGCAGCATAGTGTGGTTCAGAAGAGATCTGAGGGTAGAGGACAACCCTGCACTGACGGCAGGAGTAAGAGCTGGTGCTGTGGTTGCAGTTTTCATCTGGGCACCTGAAGAAGAAGGGCAGTACTACCCCGGCAGAGTCTCTAGGTGGTGGCTCAAACAAAGCTTGGGTCATCTTGATTCTTCTCTCAGGAATCTTGGCACTCGTCTCATCACTAAGCGATCCACTGATACTGTTTCTTCTCTCCTTGAGGTTGTTAAGTTCACCGGAGCTACTCAACTCTATTTTAATCATTTATATGATACCCTATCACTTGTAAAGGATCACCGAGTAAAAGAGGCTCTAAATACTCAGGGCATAACAGTACGTTCCTTCAACGCAGATTTACTATATGAACCATGGGATGTGAATGATGTCCATGCTCGACCATTCACAACTTTTGCTGCTTTCTGGGACAGATGTCTTAACATGCCTTATGACCCCGACTCACCTCTTCTTCCACCTAAAAGGATAATTCCAGGTGATGTGTCGAGATGCCCTAGTGATAGATTGGTGTTTGAAGATGAATCAGAGAAGGCAAGCAATGCACTTCTTGCTAGAGCATGGTCACCAGGGTGGAGCAATGCTAACAAGGCATTGACAGCCTTCATAAATGGTCCACTGATAGAGTACTCAATAAATTGCAGGAAGGCTGACAGTGCCACTACCTCACTTCTCTCACCCCATTTGCATTTTGGTGAGTTGAGTGTCAAGAAGGTCTTCCATCTTGTCCGCATCAAACAACTTTTGTGGGCCAACGAAGGAAACAAGGCCTGTGAAGAGAGTGTGAACTTGTTCCTTAAATCTATTGGTCTTAGAGAATATTCGAGGTACATTAGTTTCCACCACCCCTACAGTCATGAAAGGCCTCTTCTAGGCCACCTTAAGTTCTTTCCTTGGGTTGTAAATGAGGCTTATTTTAAGGCATGGAGACAAGGCAGAACTGGGTACCCTTTAGTGGATGCAGGGATGAGGGAGTTGTGGGCTACTGGTTGGCTGCATGATCGCATACGTGTTGTAGTTTCCAGTTTTTTTGTGAAAGTTTTGCAGCTTCCTTGGAGGTGGGGAATGAAATATTTCTGGGACACCCTTTTGGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAGTACATAACTGGTACACTCCCGGATGGTCGTGAATTTGACCGAATCGATCATCCACAGTTTGAGGGCTATAAATTCGATCCCAATGGAGAATATGTGCGACGCTGGCTTCCAGAACTTGCAAGATTACCTACTGAGTGGATACATCATCCTTGGAATGCACCAGAATCAGTGCTCCAAGCTGCTGGAATTGAGCTAGGATCCAACTATCCTCTTCCAATTGTGGGAATAGATGCAGCAAAAACTAGATTACAAGAGGCATTATCAGAAATGTGGCAACTAGAGGCTACTTCAAGAGCTGCAGTGGAAAATGGAACTGAGGAAGGACTTGGAGAATCCTCTGAATCAATTCCTGCTGCTTTTCCGCAAGACACGCAAATGGAGGAAACTCATGAACCTGTTAGGAACAATCCCCTTCCTGTTGCTCGGCGCTACCTGGATCAGATGGTTCCAAGCATCACTTCCACCCTGCTGAGAGTAGAAGATGAAGAAACTACTTCTGATCTTCGAAACTCAGAAGAAGAGAGCAGCAGAGCTGAAGTGCCAATAAATGTAAATGCACAACATAATGCAGGAGTTACATGGAACGAACGGATCATGCAGACTGCTCATAGAAATACACAAGTACAATACAATACTACAATGGAGCTGAGAAACGTAGCTGAAGATTCTGCCGTAGAATCTTCAAGTGGTACCAGGAGAGAACGGGATGGAAGTGCAGTTCCAGTATGGTCTCCCCCTGCTTCCAGTTACTCAGAACAATTTGTAGGAGACGAAAATGGTATTACAAACCTCTTCCTTGCAAAGGCATCCTAG | 1998 | 0.454 | MRGGGGCSIVWFRRDLRVEDNPALTAGVRAGAVVAVFIWAPEEEGQYYPGRVSRWWLKQSLGHLDSSLRNLGTRLITKRSTDTVSSLLEVVKFTGATQLYFNHLYDTLSLVKDHRVKEALNTQGITVRSFNADLLYEPWDVNDVHARPFTTFAAFWDRCLNMPYDPDSPLLPPKRIIPGDVSRCPSDRLVFEDESEKASNALLARAWSPGWSNANKALTAFINGPLIEYSINCRKADSATTSLLSPHLHFGELSVKKVFHLVRIKQLLWANEGNKACEESVNLFLKSIGLREYSRYISFHHPYSHERPLLGHLKFFPWVVNEAYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDGREFDRIDHPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKTRLQEALSEMWQLEATSRAAVENGTEEGLGESSESIPAAFPQDTQMEETHEPVRNNPLPVARRYLDQMVPSITSTLLRVEDEETTSDLRNSEEESSRAEVPINVNAQHNAGVTWNERIMQTAHRNTQVQYNTTMELRNVAEDSAVESSSGTRRERDGSAVPVWSPPASSYSEQFVGDENGITNLFLAKAS | 665 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco7g01119 | 665 | Coils | Coil | 471 | 491 | - | - | |
| Phco7g01119 | 665 | Pfam | FAD binding domain of DNA photolyase | 284 | 482 | IPR005101 | - | |
| Phco7g01119 | 665 | MobiDBLite | consensus disorder prediction | 553 | 575 | - | - | |
| Phco7g01119 | 665 | FunFam | Deoxyribodipyrimidine photo-lyase | 302 | 491 | - | - | |
| Phco7g01119 | 665 | PANTHER | CRYPTOCHROME | 7 | 491 | IPR002081 | - | |
| Phco7g01119 | 665 | ProSitePatterns | DNA photolyases class 1 signature 2. | 353 | 372 | IPR018394 | - | |
| Phco7g01119 | 665 | Pfam | Blue/Ultraviolet sensing protein C terminal | 512 | 627 | IPR020978 | - | |
| Phco7g01119 | 665 | Gene3D | - | 135 | 294 | - | - | |
| Phco7g01119 | 665 | NCBIfam | cryptochrome photoreceptor | 7 | 483 | IPR014134 | GO:0009785|GO:0009882 | |
| Phco7g01119 | 665 | SUPERFAMILY | Cryptochrome/photolyase FAD-binding domain | 195 | 489 | IPR036134 | - | |
| Phco7g01119 | 665 | MobiDBLite | consensus disorder prediction | 555 | 571 | - | - | |
| Phco7g01119 | 665 | Gene3D | DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 | 302 | 503 | - | - | |
| Phco7g01119 | 665 | SUPERFAMILY | Cryptochrome/photolyase, N-terminal domain | 8 | 179 | IPR036155 | - | |
| Phco7g01119 | 665 | ProSiteProfiles | Photolyase/cryptochrome alpha/beta domain profile. | 6 | 135 | IPR006050 | - | |
| Phco7g01119 | 665 | Gene3D | HUPs | 9 | 207 | IPR014729 | - | |
| Phco7g01119 | 665 | PRINTS | DNA photolyase signature | 392 | 406 | IPR002081 | - | |
| Phco7g01119 | 665 | PRINTS | DNA photolyase signature | 353 | 371 | IPR002081 | - | |
| Phco7g01119 | 665 | PRINTS | DNA photolyase signature | 333 | 349 | IPR002081 | - | |
| Phco7g01119 | 665 | Pfam | DNA photolyase | 8 | 162 | IPR006050 | - | |
| Phco7g01119 | 665 | ProSitePatterns | DNA photolyases class 1 signature 1. | 333 | 345 | IPR018394 | - | |
| Phco7g01119 | 665 | MobiDBLite | consensus disorder prediction | 616 | 649 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco7g01119 | Phco-Chr7 | 9490127 | 9501119 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco7g01119 | 7 | 9490127 | 9501119 | Phco7g01119 | 7 | 9490127 | 9501119 | ECH | |
| Phco3g01295 | 3 | 12228165 | 12232463 | Phco7g01119 | 7 | 9490127 | 9501119 | PCT |