Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01295 ATGTCAGGAGGTGGATGCAGCATAGTGTGGTTTAGGAGAGATCTGAGGGTAGAGGATAACCCGGCACTGGCTGCAGGAGTGCGAGCAGGAGCTGTGATTGCTGTTTTCATATGGGCTCCAGAAGAAGAGGGTCAATACTACCCTGGTAGGGTCTCTAGGTGGTGGCTCAAACAAAGTTTGGCTCACCTTGATTCCTCTTTGAGAAGCCTTGGCACTCCCCTAATCACCAAGCGCTCCACTAATAGTGTTTCTTCTCTATTGGAGGTCATTAAGTCAACTGGGGCTACTCAACTCTTTTTCAACCATTTATATGATCCATTGTCACTTGTGAGGGATCACCGGGCAAAGGAGGTTCTGACTGCTCAAGGCATTACCGTACGTTCATTCAACTCGGACTTATTGTATGAACCATGGGATGTGAATGATGCTCATGGCCAACCATTCACAACTTTTTCTGCTTTTTGGGAAAGATGCCTCAGCATGCCTTATGACCCACAAGCACCTCTTCTCCCACCTAAGAGAATTATTCCAGGTGATGCTTCAAGGTGCCCTTGTGATACATTGGTGTTTGAAGACGAATTAGAGAAGGCAAGCAATGCGCTTCTTTCTCGAGCATGGTCACCGGGGTGGAGCAATGCTGACAAGGCATTGACAGCATTCGTAAATGGTCCTCTGATTGAATACTCAAAGAATCGTAGGAAGGCTGATAGTGCCACAACCTCATTTCTCTCTCCACATTTGCACTTTGGTGAGGTGAGTGTAAAGAAAGTGTTCCATCTTGTCCGCATTAAGCAAGTGTTTTGGGCCAATGAAGGGAACAAGGCTGGTGAAGAGAGTGTGAACTTGTTTCTCAAGTCTATTGGTCTTAGAGAGTATTCAAGGTATATCAGTTTCAACCACCCCTACAGTCATGAGAGGCCCCTTCTAGGCCACCTTAAGTTTTTCCCTTGGGTGGTGAATGAAGGGTACTTCAAGGCTTGGAGACAAGGCAGAACAGGGTACCCTTTGGTGGATGCTGGAATGAGAGAGTTGTGGGCAACTGGTTGGTTGCATGATCGGATACGTGTTGTGGTTTCAAGTTTCTTTGTGAAGGTGCTGCAGCTTCCCTGGAGATGGGGAATGAAGTATTTCTGGGATACCCTTTTGGATGCAGATCTTGAGAGTGATGCCCTTGGTTGGCAGTACATATCTGGTACTCTCCCTGATGGTCGCGAATTTGATCGAATAGATAATCCACAGTTTGAGGGGTATAAATGTGACCCAAATGGAGAATATGTTCGACGCTGGCTTCCTGAACTTGCTAGATTGCCAACTGAATGGATACACCATCCGTGGAATGCACCAGACTATGTACTGCAAGCTGCTGGAATTGAACTTGGTTCAAATTATCCTCTCCCCATTGTGGGAATAGATGCTGCAAAAGTTAGATTGCAAGAAGCACTTATACAAACGTGGCAACAAGAAGCAGCTTCAAGAGCTGCAATTGAAAATGGAACCGAGGAAGGGCTTGGAGACTCATCTGAATCAGCCCCTATTGCTTTTCCCCAAGACACACTCATGGAAGAAAGGCCTGCTGAACCTGTTAGGAACAACCCACCTCATGGTACTCGGCGCTACGAGGATCAGATGGTCCCAAGTATGACTTCTTCCCATGTGAGAGTGGAAGAGGAAGAAACATCTTCAGACCTTCGAAATTCAGCAGCAGACAACAGAGCCGAAGTTCCTACAAATGTGACCACACAACAAAATGCAAGAGAGACAGTGAATCAAGGAGAGCTGCTGAATGGAAATAGAAACACTCGAGTACAGAATAATGCTACAATGTGGCTGAGAAATGCAGCTGAAGATTCCACAGCAGAATCTTCAATTAGTACTAGGAGAGAAAGGGATGGGGGTGTAGTTCCAGTTTGGTCTCCCCCAGCATCTAACTTCTCAGAACAATATGCAGATGATGAAAATGGTATTGGAGCCAGTTCATCTTACTTGCAGAGGCAGCATCCTCAGTCTCATCAATTGATGAACTGGACGCGGCTACCTCAGACTGGGTAA 2049 0.4636 MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGQYYPGRVSRWWLKQSLAHLDSSLRSLGTPLITKRSTNSVSSLLEVIKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQGITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQAPLLPPKRIIPGDASRCPCDTLVFEDELEKASNALLSRAWSPGWSNADKALTAFVNGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPDYVLQAAGIELGSNYPLPIVGIDAAKVRLQEALIQTWQQEAASRAAIENGTEEGLGDSSESAPIAFPQDTLMEERPAEPVRNNPPHGTRRYEDQMVPSMTSSHVRVEEEETSSDLRNSAADNRAEVPTNVTTQQNARETVNQGELLNGNRNTRVQNNATMWLRNAAEDSTAESSISTRRERDGGVVPVWSPPASNFSEQYADDENGIGASSSYLQRQHPQSHQLMNWTRLPQTG 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01295 682 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
Phco3g01295 682 PRINTS DNA photolyase signature 352 370 IPR002081 -
Phco3g01295 682 PRINTS DNA photolyase signature 143 159 IPR002081 -
Phco3g01295 682 PRINTS DNA photolyase signature 332 348 IPR002081 -
Phco3g01295 682 PRINTS DNA photolyase signature 391 405 IPR002081 -
Phco3g01295 682 PANTHER CRYPTOCHROME 6 490 IPR002081 -
Phco3g01295 682 MobiDBLite consensus disorder prediction 565 600 - -
Phco3g01295 682 MobiDBLite consensus disorder prediction 613 682 - -
Phco3g01295 682 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Phco3g01295 682 Pfam FAD binding domain of DNA photolyase 283 480 IPR005101 -
Phco3g01295 682 Gene3D HUPs 8 206 IPR014729 -
Phco3g01295 682 NCBIfam cryptochrome photoreceptor 6 481 IPR014134 GO:0009785|GO:0009882
Phco3g01295 682 MobiDBLite consensus disorder prediction 522 536 - -
Phco3g01295 682 FunFam Deoxyribodipyrimidine photo-lyase 301 490 - -
Phco3g01295 682 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 178 IPR036155 -
Phco3g01295 682 MobiDBLite consensus disorder prediction 516 600 - -
Phco3g01295 682 Pfam Blue/Ultraviolet sensing protein C terminal 510 626 IPR020978 -
Phco3g01295 682 Gene3D - 134 293 - -
Phco3g01295 682 MobiDBLite consensus disorder prediction 640 682 - -
Phco3g01295 682 FunFam Cryptochrome 1 8 148 - -
Phco3g01295 682 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Phco3g01295 682 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 192 488 IPR036134 -
Phco3g01295 682 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Phco3g01295 682 Pfam DNA photolyase 7 163 IPR006050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01295 Phco-Chr3 12228165 12232463 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01295 3 12228165 12232463 Phco3g01295 3 12228165 12232463 ECH
Phco3g01295 3 12228165 12232463 Phco7g01119 7 9490127 9501119 PCT