Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01112 ATGGCCTTGTGCAGGTGTTTCTCCTTTTTTACTGGAAAGAAAGCGGGAAACAAGGGTACTGCTGAAGGGCCTTCAACAGGGGACCTTAGAGCTGAACTTGGTGAAATACAGCACCCGAAGATTTCATCAGAGCGTCGTGATTTGAAGCCGGCCACCCTCGATGTCACGGTACCCTTTGGTGTGCAGAAGAATTCAAGGGGAAATGTGAGGATCATGAATCTTGAGAGTCCTGTGAAGACTGAGGTGGAGGAAGCTTATGAAGGGGAAGACGAGCATGAGGAGTCTCCTTCCATCAAGAGGGAGCTCTCTGATTTTGATCTTCAAGTCCACCAAGCTACTGCAAGCAAAGAAAGATATGATCCATCAAATGAAGAGATAGAATACCCCAGTCCGTATGAAGACCAAGCTAACATTCAATTCGAAGACAGAGACCATCAATACAGCAAAAAGAGTGATGATATAATCCAAAGTGGACATGTCAGTGATCCTGGGATTGGCAAGGCTGACTTTTGGGCTTCCCCAGAGCTCAAGAGATCTTGTTCTGACCTGGAAAGAAGGGATGTATTTATGAAGACTTCTCATCTCTTTCCAACTTCTAAGTCACAGTCTTTTGAGGATTTGCAAGGATTATCAGCATATCAGATGGTTAATCAAAGCCCCAGGTCTGTGATGACTCACTGCAGTGCTGATAGAGTGATGTTGAAAAGGCATTCCTCAAGTCAAGTTCTCCCTTCTAGAAGTAAAAGATTGTGGTGGAAGTTGTTCCTGTGGAGCCACAGGAATATACATAGATCTAACTTAAGCAAGTCGACACAAATACATCCTGCAATTGCTGCTTTAAGTAGTCAATGTGGCTACTCCTCCGACACCGTTGAACCAAAACAAGGCAAGGCATTGAGACACGAAGAATCACCCTCACCAACCTCATCTTTTGGGGAATATTTTCAGAAAAGCTGCGATGGCCAAAATATTGATAACCAAAGGTGGAGCAGATTTCAAAAAGAGAATTTTGGATTTTGGCCACAGAATCAATGGGTGGCTTTCTCAACAGAATCATCCTCGCTTAGCAGAGTGAATGAGTGGGTGAAAGATCTCGAAATTCAGCAGCCACCTCCTGAGGATGATTTTGGTGATGACAGCATTGGAAGCATTGCCTTCCCACCTTCTCCTGATGATGGTAGATCAATTGCAAGAAGCACATCTCAGTTGATTCGACATCCAGATGCCAATATTTCAAAAGATATAATGAATGCCAATAGTCTGGTCCAGTCCCTGAACCCAGCCTCAACTGCAGCTCATATATCAGGCATTGGTATAAAAGCCATCCCCTCCCTTTCACACTTCTTCAGTCTCCGCTCTGTCAATTTGTCAAGCAATCTTATAGTTCACATCACGCCTGGATTTCTCCCAAAGGGTATTCATACACTGAATCTGTCAAGAAACAAAATCAGCACTATTGAGGGCCTGAGAGAATTAACCCGGCTGCGGGTACTTGATTTAAGTTATAATCGCATTTCAAGAATTGGACAAGGATTATCAAATTGTACCCTAGTCAAAGAGCTATATCTTGCCGGAAACAAGATAGGTGATGTTGAGGGGCTACATAGGTTATTGAAGCTAACAGTTCTGGACTTGAGCTTTAACAAGATCGCAACCACAAAAGCATTAGGCCAGCTGGTGGCTAACTACAACTCACTTCAGGCCTTGAGTCTGCTAGGAAATCCAATTCAAAGCAACATCAGTGATGACCAGTTGCGCAAAGCAGTTAGTGGTCTTCTTCCAAAGCTTGGGTACCTGAACAAGCAATCTATCAAGCCTCAAAGGGGACGAGAAATACTCACTGATAGTGTTGCCAAAGCTGCCCTTGGGAACAGCGGCCACAACTCCTACAGAAGAGTACTAAAGAAAGGTGGTGGCCAAGGAGGCTCAAGTTCCTCCAGTGTGCATAGAGGAAGTGCTAGTGTTTCCCACAATAGCAGGAACAGGTCAAGGAGCCGAACTAAGCGTCATTAG 2013 0.4451 MALCRCFSFFTGKKAGNKGTAEGPSTGDLRAELGEIQHPKISSERRDLKPATLDVTVPFGVQKNSRGNVRIMNLESPVKTEVEEAYEGEDEHEESPSIKRELSDFDLQVHQATASKERYDPSNEEIEYPSPYEDQANIQFEDRDHQYSKKSDDIIQSGHVSDPGIGKADFWASPELKRSCSDLERRDVFMKTSHLFPTSKSQSFEDLQGLSAYQMVNQSPRSVMTHCSADRVMLKRHSSSQVLPSRSKRLWWKLFLWSHRNIHRSNLSKSTQIHPAIAALSSQCGYSSDTVEPKQGKALRHEESPSPTSSFGEYFQKSCDGQNIDNQRWSRFQKENFGFWPQNQWVAFSTESSSLSRVNEWVKDLEIQQPPPEDDFGDDSIGSIAFPPSPDDGRSIARSTSQLIRHPDANISKDIMNANSLVQSLNPASTAAHISGIGIKAIPSLSHFFSLRSVNLSSNLIVHITPGFLPKGIHTLNLSRNKISTIEGLRELTRLRVLDLSYNRISRIGQGLSNCTLVKELYLAGNKIGDVEGLHRLLKLTVLDLSFNKIATTKALGQLVANYNSLQALSLLGNPIQSNISDDQLRKAVSGLLPKLGYLNKQSIKPQRGREILTDSVAKAALGNSGHNSYRRVLKKGGGQGGSSSSSVHRGSASVSHNSRNRSRSRTKRH 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01112 670 Pfam Leucine rich repeat 450 505 IPR001611 GO:0005515
Phco7g01112 670 ProSiteProfiles Leucine-rich repeat profile. 517 538 IPR001611 GO:0005515
Phco7g01112 670 ProSiteProfiles Leucine-rich repeat profile. 472 493 IPR001611 GO:0005515
Phco7g01112 670 ProSiteProfiles Leucine-rich repeat profile. 539 560 IPR001611 GO:0005515
Phco7g01112 670 MobiDBLite consensus disorder prediction 639 660 - -
Phco7g01112 670 Gene3D Ribonuclease Inhibitor 513 609 IPR032675 -
Phco7g01112 670 PANTHER NISCHARIN RELATED 209 656 - -
Phco7g01112 670 MobiDBLite consensus disorder prediction 80 100 - -
Phco7g01112 670 ProSiteProfiles Leucine-rich repeat profile. 494 516 IPR001611 GO:0005515
Phco7g01112 670 SMART LRR_sd22_2 515 536 - -
Phco7g01112 670 SMART LRR_sd22_2 470 491 - -
Phco7g01112 670 SMART LRR_sd22_2 492 514 - -
Phco7g01112 670 SMART LRR_sd22_2 537 558 - -
Phco7g01112 670 Pfam Leucine Rich repeat 515 531 IPR001611 GO:0005515
Phco7g01112 670 Pfam Leucine Rich repeat 539 550 IPR001611 GO:0005515
Phco7g01112 670 MobiDBLite consensus disorder prediction 628 670 - -
Phco7g01112 670 SMART LRR_typ_2 448 470 IPR003591 -
Phco7g01112 670 SMART LRR_typ_2 492 515 IPR003591 -
Phco7g01112 670 SMART LRR_typ_2 537 559 IPR003591 -
Phco7g01112 670 Gene3D Ribonuclease Inhibitor 393 512 IPR032675 -
Phco7g01112 670 FunFam Outer arm dynein light chain 1 protein 511 609 - -
Phco7g01112 670 MobiDBLite consensus disorder prediction 288 310 - -
Phco7g01112 670 FunFam Outer arm dynein light chain 1 protein 397 510 - -
Phco7g01112 670 SUPERFAMILY Outer arm dynein light chain 1 439 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01112 Phco-Chr7 9437740 9440215 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01112 7 9437740 9440215 Phco7g01112 7 9437740 9440215 ECH
Phco3g01290 3 12139107 12142421 Phco7g01112 7 9437740 9440215 PCT