Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01290 ATGCTGAGTTATGCATATGCATATGCATGGCCTACATGTGTGTGGAGATGCTCGGTTCTACTTTACAAGGTTCGTCATTTCTGCACCAATGCTCCCAATTCTCGCCGCAATTTGCGTGTGACTGTGTCTGCTTTAGAATCACAAGGAGGAGGCATTAGAGATTGTTTAGAAAGTGCAACCGACTCAAAAGCGGCAGAGAACATAAAATTGAAGGGATTTGGAACAAGCCTTGTCTTTTTGGTGGCAATCATGGCTATGTGCTTCTCTCTTTTGACTGTAAGGAAGGAGAAATACAGGGGGAGTGGAAGGTCTTCAAAGGAGGACTTTAGCACTCTACTTGCCAAGCTACAATCTTCAAAAATAGCATCAGTGCCAACCACTTTTGATGTCACGGTATCGAATGATATTCCGAAAAATTCAAGTTTCAATTCGGGGGTTACGAGTCTTGATACTTGTGTGGAGCCTGAAGTACAAGAGGCTTATGAAGGGGAAGATGAGAATGAATATTCACCGAAAATCAAGAGGGTACTCTCTGATTTTCACGTCCAAGATCATGAAGCTGTTGCAGGCAATGGATATGATGCAACTGATAAAGCGATAGAGTATCCCATTTTATATGAAAATCAAGTCATCGAAGAATTGGATGACAGAACCGATAAATACAGCCGAAAGAGTGTTGAAACAACCGAAAGTGGACACGTCAGTGATCCTGGGATTGGCAAAGCTGATTTGTGGACTTCTCCAAAGTTCAAGAGACACTTCTCTAACCTTGAAAAGTTTGATGAGCATGGGAAGAAAACTCATTATTTGTCAGCTCTAGAGTCAAAGTCTTTTGAGAATTTTAAGGAAATAGCAGCAATGATTAATCTTGAAAGCCCTAGGTCAGTGAGGAGTCACTACAGTGCTGATAGAGTAATGCTGAAAAGGCATTCTTCATGTCAGGTGCTTCCTTCTGGAAGAAAGAAATTGTGGTGGAAGATGATCCTGTGGAGCCACAGGAACATACACGGAACTTTCTCTAGTAATTCAACACTAGCTCCTGCTAGTGCTGCTTTAAATAGTGGGTACTCTTCAGACACTATTGAACCAAAACAAGAAAAGACATGGAGGCCTGTGAAATCTTCTGGTTCTATTACTGTGGAATCCCATAACAAAAGAAGAACAGGTAAAAATATGGATAATCAAAGGAGGAGCAGGTTTCAAAGTGACCGATGGATTGCTTTCTCCAAAGAATCATCCTCTTTTGCCAGAGTGGATGCATGGGTGAAAGGTCTTGAAATTCAGCCACTAATTCCTGAGGATGATTTTAATGTTGACAATGGCAGAAGCATTGCCTTCCCACCTTCTCCAGATACTGGTGGAAGAATAATGACAGCTACATCTCAGTTGACTTATTCCGAAGCCAATGTTTCAAAAGAGACTTTAACTGCCATTAGTGTAGTCCAGTCTCTAAATCCAGCTTCATCTATTGCTCACATATCTGGTATTGGTGTAAAAGCCATCCCTGCTATTTCACACTTATCCAATCTCCGCTCTGTCAACCTGTCAAACAATTTCATAGCTCACATCTCACCAGGAGTTCTACCAAAGGGTATTCAAACACTTAACTTGTCAAGAAACAAGATCAGCACTCTTGACGGCCTCAGAGAATTGACCAAGTTGCGGGTAATTGACTTAAGTTACAACCGCATCTCGAGAATTGGACAAGGCTTGTCAAGTTGCACACTTGTGAAAGAACTATATCTTGTGGGGAACAAGATAAGTGATGCTGAAGGGCTACACAGGCTATTGAAGCTAACAGTTCTAGATTTGAGCTTCAACAAGATCACAACAACAAAAGCATTAGGCCAGCTAGTGGCTAGCTACAACTCACTTAAGGCTCTTAATCTGCTGGGAAATCCGATTGAAAGCAACATCAGCCATGGCCAGCTAAGTAAAGCAGTCTCTGGTCTTCTTCCAAAGTTGGTGTACCTGAACAAGCAACCCCTCAAGGCTCATAGCACACGCGAAATATTAACTGACAGTGTTGCCAGAGCTGCCCTTGGGAGCAGCACGCGAAGCTGTCACAAAAGATCAATAAGAAGACTTAGCCAGGGAGGATCAAGTCTTTCCAAAGAGTATAGAAGAAGTTCAAGTGGTTCCCAAAAAAGCACGAATCGAACAAGGAGGTGA 2172 0.4231 MLSYAYAYAWPTCVWRCSVLLYKVRHFCTNAPNSRRNLRVTVSALESQGGGIRDCLESATDSKAAENIKLKGFGTSLVFLVAIMAMCFSLLTVRKEKYRGSGRSSKEDFSTLLAKLQSSKIASVPTTFDVTVSNDIPKNSSFNSGVTSLDTCVEPEVQEAYEGEDENEYSPKIKRVLSDFHVQDHEAVAGNGYDATDKAIEYPILYENQVIEELDDRTDKYSRKSVETTESGHVSDPGIGKADLWTSPKFKRHFSNLEKFDEHGKKTHYLSALESKSFENFKEIAAMINLESPRSVRSHYSADRVMLKRHSSCQVLPSGRKKLWWKMILWSHRNIHGTFSSNSTLAPASAALNSGYSSDTIEPKQEKTWRPVKSSGSITVESHNKRRTGKNMDNQRRSRFQSDRWIAFSKESSSFARVDAWVKGLEIQPLIPEDDFNVDNGRSIAFPPSPDTGGRIMTATSQLTYSEANVSKETLTAISVVQSLNPASSIAHISGIGVKAIPAISHLSNLRSVNLSNNFIAHISPGVLPKGIQTLNLSRNKISTLDGLRELTKLRVIDLSYNRISRIGQGLSSCTLVKELYLVGNKISDAEGLHRLLKLTVLDLSFNKITTTKALGQLVASYNSLKALNLLGNPIESNISHGQLSKAVSGLLPKLVYLNKQPLKAHSTREILTDSVARAALGSSTRSCHKRSIRRLSQGGSSLSKEYRRSSSGSQKSTNRTRR 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01290 723 MobiDBLite consensus disorder prediction 383 397 - -
Phco3g01290 723 FunFam Protein phosphatase 1 regulatory subunit pprA 468 649 - -
Phco3g01290 723 MobiDBLite consensus disorder prediction 694 723 - -
Phco3g01290 723 ProSiteProfiles Leucine-rich repeat profile. 531 552 IPR001611 GO:0005515
Phco3g01290 723 ProSiteProfiles Leucine-rich repeat profile. 598 619 IPR001611 GO:0005515
Phco3g01290 723 MobiDBLite consensus disorder prediction 359 397 - -
Phco3g01290 723 Gene3D Ribonuclease Inhibitor 574 668 IPR032675 -
Phco3g01290 723 Pfam Leucine Rich repeat 598 610 IPR001611 GO:0005515
Phco3g01290 723 Gene3D Ribonuclease Inhibitor 451 573 IPR032675 -
Phco3g01290 723 MobiDBLite consensus disorder prediction 687 723 - -
Phco3g01290 723 SMART LRR_sd22_2 529 550 - -
Phco3g01290 723 SMART LRR_sd22_2 596 617 - -
Phco3g01290 723 SMART LRR_sd22_2 574 595 - -
Phco3g01290 723 SMART LRR_sd22_2 551 573 - -
Phco3g01290 723 SUPERFAMILY Outer arm dynein light chain 1 501 661 - -
Phco3g01290 723 PANTHER NISCHARIN RELATED 281 717 - -
Phco3g01290 723 SMART LRR_typ_2 596 618 IPR003591 -
Phco3g01290 723 SMART LRR_typ_2 507 530 IPR003591 -
Phco3g01290 723 SMART LRR_typ_2 551 574 IPR003591 -
Phco3g01290 723 Pfam Leucine rich repeat 532 587 IPR001611 GO:0005515
Phco3g01290 723 ProSiteProfiles Leucine-rich repeat profile. 553 575 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01290 Phco-Chr3 12139107 12142421 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01290 3 12139107 12142421 Phco3g01290 3 12139107 12142421 ECH
Phco3g01290 3 12139107 12142421 Phco7g01112 7 9437740 9440215 PCT