Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01087 ATGTACGGTGGCTACTATTTATTAAGACCAAAACCACCTTCAAATCAAACATTCAAATTCAATCTCATGACCACTCTCGCACTCAAACCCCACACCACTCTCCACCATGACCTTTTTCTTTTCTATTTTTATTTTCTTCTCCTCACACACTTTCCGCCCCCGGCCGCGGCGCAGCTTCCCAACGCGCTGACGCCACCGCCGCCGGACCGGCTATCGAAGCTGAAGTTCGACAAGTCCATGGCCATCGTTCTGGTGATCCTGGTGGCGGTGTTCTTCTTACTTGGGTTCCTCTCCGTGTACACGCGCCAGTGCGCAGAGCGAAGGATGCGAGGGAGGTTCGACCTCTCCATCTCGATCGGGCGTCGGAACCGCGGTCTGGACCGCGAAATCATCGAGACCTTCCCCACCTTCGTTTACTCCACCGTGAAGAGCCTGAAGATAGGACGGGCCACGCTAGAATGCGCCGTGTGCCTGAGCGAGTTCGAGGAGGAGGAAACGCTGCGTTTGATACCCAAGTGCAGCCATGTGTTCCACCCCGAGTGCATCGACGCGTGGCTCGCCAATCACTCCACTTGTCCCGTCTGTCGCGCCAACCTTCACCCCAAACCCGACGACCCATCCTTTGTTTCCATCCAAATCCCGGATCCGGTTCAACCCGTTTTAAACTCCCCGGTCCAATCCGAATCCAGGGATTCTCCGAAGCCGAATGATTTGATTAATCACAACCGTTCACCGTGGTCAAGGTCAACGGGTTTCAGCATCGCCAGTTTGATTCCGCGATCTCACTCGACGGGTCACTCCCTGGTTCAACCGGGAGAGAATTGCGAGCGCTTCACTCTGCGTTTGCCCGAGGAAGTGCGGAACCAGCTGATGACTTCCACCACGCTGAGTCGCACCAAGAGCTGCGGCTTGAACCTGGGTCTCACGGGCGAGAATAGTGGGAGGAGCGGTTACAGGACCAGAAGCGTTGGTAGCAGTCTTAGTACTCACGTGACGAGAGGCGTGCGTAGCACCAGCAGCAGCCCTCACGTGAGGGGACACGACAGACGTTGGTTTTTTCAGAGCCCTCCCGCAAAGGACTCCATTAAAGAAGATGTCGGCGAACGTTCCTCGGATCGCCTTTTCTCGGAGACCACAAAGGATAGTGATAATTAA 1155 0.5532 MYGGYYLLRPKPPSNQTFKFNLMTTLALKPHTTLHHDLFLFYFYFLLLTHFPPPAAAQLPNALTPPPPDRLSKLKFDKSMAIVLVILVAVFFLLGFLSVYTRQCAERRMRGRFDLSISIGRRNRGLDREIIETFPTFVYSTVKSLKIGRATLECAVCLSEFEEEETLRLIPKCSHVFHPECIDAWLANHSTCPVCRANLHPKPDDPSFVSIQIPDPVQPVLNSPVQSESRDSPKPNDLINHNRSPWSRSTGFSIASLIPRSHSTGHSLVQPGENCERFTLRLPEEVRNQLMTSTTLSRTKSCGLNLGLTGENSGRSGYRTRSVGSSLSTHVTRGVRSTSSSPHVRGHDRRWFFQSPPAKDSIKEDVGERSSDRLFSETTKDSDN 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01087 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 202 IPR013083 -
Phco7g01087 384 PANTHER RING FINGER DOMAIN-CONTAINING 64 204 - -
Phco7g01087 384 Pfam Ring finger domain 153 196 IPR001841 -
Phco7g01087 384 SMART ring_2 154 195 IPR001841 -
Phco7g01087 384 MobiDBLite consensus disorder prediction 312 341 - -
Phco7g01087 384 SUPERFAMILY RING/U-box 148 204 - -
Phco7g01087 384 CDD RING-H2_EL5-like 153 196 - -
Phco7g01087 384 MobiDBLite consensus disorder prediction 312 384 - -
Phco7g01087 384 MobiDBLite consensus disorder prediction 219 245 - -
Phco7g01087 384 FunFam E3 ubiquitin-protein ligase ATL6 115 202 - -
Phco7g01087 384 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Phco7g01087 384 MobiDBLite consensus disorder prediction 361 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01087 Phco-Chr7 9137280 9138434 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01087 7 9137280 9138434 Phco7g01087 7 9137280 9138434 ECH
Phco3g01254 3 11447482 11448636 Phco7g01087 7 9137280 9138434 PCT