Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01254 ATGGAATGCCCTGCACCTCCACCTGCACCGCGGTTCATGAATCTGGATCATGATCGTGCATTTTTTCTCCTTCTCATCCTCCTTCTCGTGCCGCCGGTCACGGCGCAGTTTCAAAACCCGCCTCCGTCACCGCCGCAGTTGGATCCTTTCACGAGACTGAGATTCGACAAGACCATGGCTGCGGTTCTGGTGATCCTCGTCGTGGTCTTCTTTGCGTTGGGATTCGTGTCCATCTACACGCGCCAATGCGCTGAGCGGCGGATCAGAGGGAGGCTCGACCTAGCCGTGGCGATCGCCGGCGGGATGGACCGGCGGCAGGATCACGGGCTCGACCGGGCGATAGTGGACACGTTCCCAACGTTCGTGTACTCCGAGGTTAAAGCCCTGAAGATCGGGAGGGCCACGCTGGAATGCGCTGTTTGTCTCAACGAGTTCCGCGACGACGAAACGCTGCGTTTGATCCCCAAATGCTGCCACGTGTTCCACCCCGATTGCATCGATGCATGGTTGGTGAATCACTCCACTTGTCCCGTTTGCCGCGCCAACCTGGCGCCGAAGCCCGAGGACGCGCCTCCTCCCGTTGAGATTCACATTCCGGATTCCGTCCGGCGCAATGGGCCCAACGCAGAACCCGATTATGATCCCAATTACATCAACCCGGTCGATGAAGGTGAAGAAGGTGAACGAAACAGAATAGGTACGGAGCCTCTTAGTTTAGATGATCCGAACCGGGCACGTCCAGGTCGGTCTAGATCTACCGGTTTTGGAACTTCAAGGCTGTTTCCGCGCTCTCATTCAACGGGTCACTCTCTGGTTCGACCGGGAGAGGACTGCGAGCGGTTCACACTGCGGTTGCCAGAGGATGTGCGGAATCGGCTCATGAATTCTGGGATGCTGAACCGGACCAAGAGTTGTGGGGTGACGTGGCAGCGGCAGAGTAGTGGAAGGAGGGATTACAGAACGAGGAGTGTGGGGAGAAGCTATCTGCAATACGAGAGGTTCGGTGGGGAAGGCCGGTTGGACCGGTGGGGGTTCATGTGGACCCCACCGTTTTGGGGTAGGACCGGTTCGGTGAAATCCCCAAAGTCAACGAGGATGAAGGATGAAGTGGACGTGGGAGAACGTTCCTCTGATCTTTTGTTTTGCAGAGATTGA 1155 0.5723 MECPAPPPAPRFMNLDHDRAFFLLLILLLVPPVTAQFQNPPPSPPQLDPFTRLRFDKTMAAVLVILVVVFFALGFVSIYTRQCAERRIRGRLDLAVAIAGGMDRRQDHGLDRAIVDTFPTFVYSEVKALKIGRATLECAVCLNEFRDDETLRLIPKCCHVFHPDCIDAWLVNHSTCPVCRANLAPKPEDAPPPVEIHIPDSVRRNGPNAEPDYDPNYINPVDEGEEGERNRIGTEPLSLDDPNRARPGRSRSTGFGTSRLFPRSHSTGHSLVRPGEDCERFTLRLPEDVRNRLMNSGMLNRTKSCGVTWQRQSSGRRDYRTRSVGRSYLQYERFGGEGRLDRWGFMWTPPFWGRTGSVKSPKSTRMKDEVDVGERSSDLLFCRD 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01254 384 MobiDBLite consensus disorder prediction 250 265 - -
Phco3g01254 384 FunFam E3 ubiquitin-protein ligase ATL6 79 186 - -
Phco3g01254 384 MobiDBLite consensus disorder prediction 187 273 - -
Phco3g01254 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 186 IPR013083 -
Phco3g01254 384 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Phco3g01254 384 PANTHER RING FINGER DOMAIN-CONTAINING 34 186 - -
Phco3g01254 384 CDD RING-H2_EL5-like 137 180 - -
Phco3g01254 384 SUPERFAMILY RING/U-box 118 193 - -
Phco3g01254 384 Pfam Ring finger domain 137 180 IPR001841 -
Phco3g01254 384 SMART ring_2 138 179 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01254 Phco-Chr3 11447482 11448636 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01254 3 11447482 11448636 Phco3g01254 3 11447482 11448636 ECH
Phco3g01254 3 11447482 11448636 Phco7g01087 7 9137280 9138434 PCT