Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00925 ATGGTAACATCTCCACTTCAGAAGATGAATAACACCCTCAAGTTCAACCCCTTTAAGAACCATTTGCCAATAATGTTCATGATGGTTCTTTCTCTCCCCTTCAATGTTCAATCTCAAGACAACGAAGACGAAGAACAGAACCTGCCACAAGACCCTCAAACCGTTCATCCAAGCAAGGGGGTTGTGATAGCAGTGCTCTCCACCATGTTTGCCATTACACTTATCTTATTTTTATATGTGAAGTTCTGTAGAGTCAACCCTCATCAACTTCTTACCCGAAACTCAAATCTCCAAAACTCTCAGGGCCTATCTCGATCAAGTTTAAGAGTTTGTGGTATTGACAAAGAAGTAGTTAAAACCCTCCCTTTCTTCACGTTTTCATCCCTGAAGGGGTTCAAAGAAGGCCTAGAATGCACCGTTTGTCTCTCCAAATTCGAGGACACAGAGACTCTAAGACTGCTTCCAAAGTGCAAGCACGCTTTCCACATGAATTGCATTGACAAGTGGTTTGAAAGCCACTCCACATGCCCTCTCTGTAGACGCAGGGTTGAAGCAGGGGACATCAAGGACTTCAACTACTCCCTAAGCTCAAGGTTCCTCCGAGTTCCTTCAAATCTCACCGAGGATCTAAACCTTGAAATCTTCGTTCAGAGAGAGCCTTCTCGTCGAGGGTCATCGAGAAGAGGCTTTAAGGACTCGGGGAAGTGCAAGAAACAAGAACTGCTTATTGGTGATGGCAGTGGCGGTAGTGGTGCCACAAAGTGGAACAAACATGTTCATGTGACAAACCATAAAATAATTATCTCTGATGCTTTTACGAGGAGCAGGTGGAGTGATCTTAACTCTTCGGACCTGTTGTCGTTGAGCAGCGAGATGCTTAATGATGTTAGCTGCAGGAGATTCTGTTTCAGTTCTCTGGAATCCATCGAAGACAGTGGAAAGGTTCACGGAACTTGGCGTTGTAAGGAGGAAGAAAAGTGGTTTACGGAACTGAATCCTAGTGAGAAGAGGTGCATGTCTGAGATTGCCAAAGTTCCGAGGTTTGCAGAAATGGGGAAGGAGAATACGATCGGAGAAAGTGTGAGATCTAACGAGAGATTGAGGAGAGTTTGGTTGCCGATTGCACGAAAAACGCTCCAATGGATTGCCAAACAAGAAAGGAATCGGGGTGAATTAGAACACAATACTCTTGCTTCAAATCTCTTCTGTTCCGCGCATGCTCCTTTAGCCTCTTCTCTGTTCGATGCCTCCTCCGTTAGCGATCAGCTTCACCTTTGCCATCTTCGAGTAGCTGAACTGGAACTCGAACAGCGTGCTGAGGAGCAGGTACGACACGCCGGACTCAACGATTCTCACAGTACGGTCCGCCTCGTCGGAGACGCCGACGCCCTCGCGTGGCAGGCGCTGGTTGTACTTGGAGTGGCGTTGGTGTTTGAGGCCCGAGTTCGGGGGCGGGGTTGA 1461 0.473 MVTSPLQKMNNTLKFNPFKNHLPIMFMMVLSLPFNVQSQDNEDEEQNLPQDPQTVHPSKGVVIAVLSTMFAITLILFLYVKFCRVNPHQLLTRNSNLQNSQGLSRSSLRVCGIDKEVVKTLPFFTFSSLKGFKEGLECTVCLSKFEDTETLRLLPKCKHAFHMNCIDKWFESHSTCPLCRRRVEAGDIKDFNYSLSSRFLRVPSNLTEDLNLEIFVQREPSRRGSSRRGFKDSGKCKKQELLIGDGSGGSGATKWNKHVHVTNHKIIISDAFTRSRWSDLNSSDLLSLSSEMLNDVSCRRFCFSSLESIEDSGKVHGTWRCKEEEKWFTELNPSEKRCMSEIAKVPRFAEMGKENTIGESVRSNERLRRVWLPIARKTLQWIAKQERNRGELEHNTLASNLFCSAHAPLASSLFDASSVSDQLHLCHLRVAELELEQRAEEQVRHAGLNDSHSTVRLVGDADALAWQALVVLGVALVFEARVRGRG 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00925 486 SUPERFAMILY RING/U-box 118 184 - -
Phco7g00925 486 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 36 387 - -
Phco7g00925 486 Pfam Ring finger domain 137 180 IPR001841 -
Phco7g00925 486 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Phco7g00925 486 CDD RING-H2_EL5-like 137 180 - -
Phco7g00925 486 SMART ring_2 138 179 IPR001841 -
Phco7g00925 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 188 IPR013083 -
Phco7g00925 486 FunFam RING-H2 finger protein ATL43 113 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00925 Phco-Chr7 7445317 7447069 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00925 7 7445317 7447069 Phco2g00831 2 9586420 9587613 PCT