Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00905 ATGGTGAATCCCTTGGTTGAACGTGCCACAAGCAGCATGCTCGTGGGTCCTGATTGGGCTTTGAACATGGAGATCTGTGACATACTCAATCGCGATCCTGGGCAAGGAAAGAATATTGTTAAAGGTATAAAGAAGCGGCTTGGAAGTAAAGTTCCTAGAGTTCAAATTGCTGCACTGACTCTGTTGGAGACAATCATTAAGAATTGTGGAGACATTATCCACATGCATGTTGCCGAAAGAGATGTTCTTCATGAGATGGTTAAAATAGCGAAGAAGAAGATCGATTATCATGTCCGAGAGAAGATATTGGTTCTTATAGATACTTGGCAAGAGGCTTTTGGAGGGCCAAGAGCAAGATATCCACAGTATTATGCAGCATACCAGGAGCTTTTGCGTGCTGGGGCAGTATTCCCTCAGAGGTCTGAGCGATCTGCACCTGTATTCACACCGCTACAAACACAACCATTGTCATCATACCCTCAAAATATACGAGATACTGTTGCTCGACAAGACACAGCTGAGTCCTCGGCAGATTCTGAGTTTCCAGCCCTAAGTTTGTCAGAAATTCAGAATGCTCGTGGTATTATGGATGTTCTTGCAGAAATGCTCAATGCATTGGACCCTGGTAATAAAGAAGGTCTTCAGCAGGAAGTTATTGTTGATTTAGTGGAGCAATGTCGGACATACAAGCAGAGAGTGGTACACCTTGTTAATTCAACTTCGGACGAGTCATTGCTATGCCAAGGCCTATCTCTCAATGATGATCTTCAGCGTGTCCTGGCCAAGCATGAATCCATTGCTTCGGAAACTTCTTCGGGAACTCCTGCTGAAAATCATACTGAGAATCTGAAGCCTGCACCTACTGGAGCACTTGTAGATTTTGATGGTCCTTTGGTTGATTTTGGAGATACCAGTAAACATACGGATGGAAGGTCGTCTGCTATTGCTGAAACTGGGTCTCAACCATTGAACCAGTTACTGCTTCCTGCGCCCCCAACATCCAGTGAATCAGCTCCCCCTGCAAAGGTTGATCCTAAAGTGGACCTGCTCAGTGGTGACGACTATAACTCACCAAAAGCAGAGACTTCACTTGCTCTCGTTCCCTTAGGCGAACAGCAGCCAGCCAGTCCTGTGTCTCAACAGAATGCCCTTGTTCTTTATGATATGTTTTCTAATGGAAGTAATCCGCCTATTTCTGTTAATACCCAGCCAATTAATGTTGCCGGCCAAAATAGTCCATTTTCTCCTCAATTTCAACAGCAGCAGACTTTCATATCTCAAGGGCTGTTTTACCCCAATGGAGGTGTGCCAAATGTGGGGTCACCTCGATATGAACAATCACCTTATATGCAGAGCACAGCTCCTTCTTGGAATGGTCTGTTTGCGCAGCAGCAACAGCCTCCTTCACCAGTTTACGGTACTACAAGTGGTGGATCATTTCCGCCACCTCCCTGGGAAGCTCAACCAACAGACAATGATAGTCCAGTAGTAGGCAGTCAATACCCACAACCATTGCAAGTCACTCAAGTGGTTATGACGCATATACAAAGTGGTGCACATCCTCAGGGACCGCAAGCAGCGGGGCATGACCAGGCTGTTGGAATGTATATGCAGCCAAATGCTAACCAAATCTCAACAATCAACAACAATGCTCAAAGTAATCAATCAGGCTTGTATCCGCAGCATATTCAGGGTGTTGCGAGTCCCTATACGGGTATGGCTTCACATCCAATGCATTCCATGTATCCTCAACAGATGTATGGCAACCAAGTCGTAGGATATGGCTATGGTCAGCAACCAGGGGTTCAATATGTTGAGCAGCAAATGTATGGTTTATCAGTGAGAGATGATGGTGCTCTGAGAAATTCTTACCAGGTTTCTTCTGCTTCCTATGTGCCATCTGGGAAGCCTTCCAAACCAGAGGATAATTTATTTGGGGACCTTGTTAACTTGGCAAAAGTGAAACCAAAACCTACAGCTGACAGAACTGGTAGCATGTAA 2001 0.4533 MVNPLVERATSSMLVGPDWALNMEICDILNRDPGQGKNIVKGIKKRLGSKVPRVQIAALTLLETIIKNCGDIIHMHVAERDVLHEMVKIAKKKIDYHVREKILVLIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSERSAPVFTPLQTQPLSSYPQNIRDTVARQDTAESSADSEFPALSLSEIQNARGIMDVLAEMLNALDPGNKEGLQQEVIVDLVEQCRTYKQRVVHLVNSTSDESLLCQGLSLNDDLQRVLAKHESIASETSSGTPAENHTENLKPAPTGALVDFDGPLVDFGDTSKHTDGRSSAIAETGSQPLNQLLLPAPPTSSESAPPAKVDPKVDLLSGDDYNSPKAETSLALVPLGEQQPASPVSQQNALVLYDMFSNGSNPPISVNTQPINVAGQNSPFSPQFQQQQTFISQGLFYPNGGVPNVGSPRYEQSPYMQSTAPSWNGLFAQQQQPPSPVYGTTSGGSFPPPPWEAQPTDNDSPVVGSQYPQPLQVTQVVMTHIQSGAHPQGPQAAGHDQAVGMYMQPNANQISTINNNAQSNQSGLYPQHIQGVASPYTGMASHPMHSMYPQQMYGNQVVGYGYGQQPGVQYVEQQMYGLSVRDDGALRNSYQVSSASYVPSGKPSKPEDNLFGDLVNLAKVKPKPTADRTGSM 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00905 666 Pfam VHS domain 4 129 IPR002014 GO:0035091|GO:0043130
Phco7g00905 666 CDD GAT_GGA-like_plant 188 266 - -
Phco7g00905 666 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Phco7g00905 666 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Phco7g00905 666 MobiDBLite consensus disorder prediction 308 332 - -
Phco7g00905 666 MobiDBLite consensus disorder prediction 462 499 - -
Phco7g00905 666 SUPERFAMILY GAT-like domain 141 268 - -
Phco7g00905 666 Gene3D - 1 148 IPR008942 -
Phco7g00905 666 FunFam TOM1-like protein 2 1 148 - -
Phco7g00905 666 FunFam TOM1-like protein 2 182 275 - -
Phco7g00905 666 PANTHER TOM1-LIKE PROTEIN 1 658 IPR044836 GO:0035091|GO:0043130|GO:0043328
Phco7g00905 666 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Phco7g00905 666 CDD VHS 2 132 - -
Phco7g00905 666 Gene3D - 182 275 IPR038425 -
Phco7g00905 666 MobiDBLite consensus disorder prediction 264 342 - -
Phco7g00905 666 Pfam GAT domain 194 266 IPR004152 GO:0035091|GO:0043130
Phco7g00905 666 MobiDBLite consensus disorder prediction 264 281 - -
Phco7g00905 666 MobiDBLite consensus disorder prediction 462 476 - -
Phco7g00905 666 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00905 Phco-Chr7 7267536 7279611 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00905 7 7267536 7279611 Phco7g00905 7 7267536 7279611 ECH
Phco7g00905 7 7267536 7279611 Phco2g00731 2 7722899 7736469 PCT