Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00900 ATGGCAACCCAATCGTTAGACGAAGAAACAACTAAGAAAGTGTTACGACAAGTGGAGTTTTATTTCAGCGATAGCAACCTTCTCACCGATGGTTTTATGAGGAAGAGTATCACTGAAAGCGAAGATGGTTTGATTAGTTTGGCTCTTATTTGCTCTTTCAATCGGATGCGTAAGCACCTTACTTTGGGTGATGTGAAGCCCGATGGAGTGCCCGAAGATACCGTGAAAGCTGTTGCGCAAACTTTGAGAAATTCGGCTTCACTCAAGGTCTCTGAAGATGGGAAAAGGGTTGGCAGAACAACTAAACTTCCGAATCCAGAAGAGGTTGCGCAGGCGGAGATAAGAACACTTGCTGTGTCACCATTTGAATATGATCTGAAGCTTGAAGATGTGGAGAAATTCTTTGGTCAATATGCTAAGGTTAATAGTGTTCGGCTTCCCCATCATGTTGGAGACAAAAAATTCTTCTGTGGCACTGCCCTTGTTGAATTCTCATCAGATGAAGAAGTAGAAAAAGTTTTGAAAGAAAAATTGGTGTATGCTGGGGCTGAGTTAGAATTAAAACTCAAGAAGGACTTTGATGCAGAGAGGGAAAAAGAATTAGAAGATTTTAAAAAATCTCGTCCACCTTTGGGTTCAAATCACCAGAATAACTCCAATGAAGAAGAAGAAAGCTACCCTAGAGGCTTAATTATTGCCTTCAAGCTAAAGAGTACTTCAGATGAAGTTTCTTCAGACCAAAGCGTTGCTGATCCACATAATAGTGCTGTCCCCAAAACAGGTGAAAAGCCAGAAATTGCTGCTGGAGAAAATGACCGAAAGGTAGATGAAGAAAACAATGAGACAAAAGAAGCTAAGGAAACTGGAAGTCAAGACAACAGTGAGATGAAAGAAGCAAAGAAAACTGAAAGTGAAGAAAAGAATGAAACAAAAGAAACAAATGAAACAGAAGGCGGAGAAAAGAAGCAACAAGCTGGTGAAAAATTTTCTGCCGCTGCTTACAAGGATAACATGGATGTCGTCTCACGTGAGGATTTAAGGAGTGTCTTCGAAAAATTTGGTACAGTGAAGTACATCGATTTCAAGATTGGAGAAGTGTCAGGATATATCCGATTTGAAGAAACGGAAGCTGCTCAGAAAGCTCGTGCAGCTGCAGTTATTTCAGAAAAAGGCGGTTTGGCTGTAAAGAATTTCATTGCTATTTTAGATCCAGTGACTGGTGAGGCTGAAAGAGAATACTGGAGCCAGCTTCGTGGGAATCAAGGCAAGCACCGAGAATTTAAGAACAAGCAGGGAAGGGGGGGATGGCATGGTAGAGGGAGCAAAAATGCACGCTCTAGAGATAATAATAGTTCTAGAGTTGGTCGCCCAAATAAGACTCAGAAAATTGGTGCTGCATAA 1401 0.4126 MATQSLDEETTKKVLRQVEFYFSDSNLLTDGFMRKSITESEDGLISLALICSFNRMRKHLTLGDVKPDGVPEDTVKAVAQTLRNSASLKVSEDGKRVGRTTKLPNPEEVAQAEIRTLAVSPFEYDLKLEDVEKFFGQYAKVNSVRLPHHVGDKKFFCGTALVEFSSDEEVEKVLKEKLVYAGAELELKLKKDFDAEREKELEDFKKSRPPLGSNHQNNSNEEEESYPRGLIIAFKLKSTSDEVSSDQSVADPHNSAVPKTGEKPEIAAGENDRKVDEENNETKEAKETGSQDNSEMKEAKKTESEEKNETKETNETEGGEKKQQAGEKFSAAAYKDNMDVVSREDLRSVFEKFGTVKYIDFKIGEVSGYIRFEETEAAQKARAAAVISEKGGLAVKNFIAILDPVTGEAEREYWSQLRGNQGKHREFKNKQGRGGWHGRGSKNARSRDNNSSRVGRPNKTQKIGAA 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00900 466 MobiDBLite consensus disorder prediction 200 225 - -
Phco7g00900 466 FunFam La protein 2 6 106 - -
Phco7g00900 466 CDD LA_like_plant 10 99 - -
Phco7g00900 466 SMART rrm1_1 116 188 IPR000504 GO:0003723
Phco7g00900 466 SMART rrm1_1 332 396 IPR000504 GO:0003723
Phco7g00900 466 SMART la 8 100 IPR006630 -
Phco7g00900 466 Pfam La domain 14 84 IPR006630 -
Phco7g00900 466 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 176 IPR000504 GO:0003723
Phco7g00900 466 SUPERFAMILY RNA-binding domain, RBD 341 425 IPR035979 GO:0003676
Phco7g00900 466 MobiDBLite consensus disorder prediction 416 466 - -
Phco7g00900 466 Pfam RNA binding motif 341 433 IPR014886 GO:0003723
Phco7g00900 466 SUPERFAMILY RNA-binding domain, RBD 109 192 IPR035979 GO:0003676
Phco7g00900 466 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Phco7g00900 466 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Phco7g00900 466 PRINTS Lupus La protein signature 156 174 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Phco7g00900 466 Gene3D - 328 433 IPR012677 -
Phco7g00900 466 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
Phco7g00900 466 Gene3D - 2 104 IPR036388 -
Phco7g00900 466 MobiDBLite consensus disorder prediction 243 326 - -
Phco7g00900 466 ProSiteProfiles xRRM domain profile. 320 450 IPR014886 GO:0003723
Phco7g00900 466 MobiDBLite consensus disorder prediction 210 224 - -
Phco7g00900 466 Coils Coil 293 316 - -
Phco7g00900 466 MobiDBLite consensus disorder prediction 417 433 - -
Phco7g00900 466 CDD RRM1_La 116 188 - -
Phco7g00900 466 MobiDBLite consensus disorder prediction 265 324 - -
Phco7g00900 466 Gene3D - 106 199 IPR012677 -
Phco7g00900 466 SUPERFAMILY "Winged helix" DNA-binding domain 7 103 IPR036390 -
Phco7g00900 466 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 192 IPR000504 GO:0003723
Phco7g00900 466 PANTHER LUPUS LA PROTEIN-RELATED 10 313 IPR045180 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00900 Phco-Chr7 7220454 7223437 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00900 7 7220454 7223437 Phco7g00900 7 7220454 7223437 ECH
Phco2g00714 2 7431663 7436190 Phco7g00900 7 7220454 7223437 PCT