Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00714 ATGGTGACCGCGTCGCTGGACGATGAAACCGCGAAGAAAGTCGTACGACAGGTGGAGTTCTACTTCAGTGATAGCAACCTTCCCAGAGACAACTTTCTGAAGAAAACCATCAGTGAAAGCGAAGATGGCATGGTTAGTTTGGCTCTTATTTGTTCTTTTAATCGGATGCGAAAGCACCTTAAACTGGAGGAAGTTAAGCCGGTTGAGGTGACCGAAGATACAGTCAAAGCTGTTGCTCAAGCTTTGAAAGATTCGGCTTTGGTCAGAGTCTCAGAAGATGGGAACAAAGTTGGCAGGTCAACTGAACTTCTGAAGCCAGAAGAGGTAATTGAGCAGGTAGAGATAAGAACAATTGCTGCATCGCCATTTCAATATGATGTGAAGCTTGAAGATGTGGAGGCACTCTTTGGTCAATATGCCAAGGTTAACAGTGTTCGGTTGCCTCGCCATGTTGGAGACAAAAGGTTCTTTTGTGGCACTGCTCTTATTGAGTTTTCATCAGATGAAGAAATGAAATTCTTTTTGAAGGAAAACCTTGTCTATGCAGGGGCTGAGTTAGAATTAAAGCCAAAGAAGGACTTTGATGTGCAGAGGGAGAAAGAATTAGAAGAGCATGAAAAATTTCGTCCACTTGTGGGTTTAGATCACCAGAATAACACAAATACAGAAGCAGTCTACCCTAAAGGCTTACTTATAGCCTTCAAGCTAAAGACTATTTCTGATAAGGTTCCTTCAGAACAAAATAACCCTGATCAACAAACCAATGACGCTCATGATATCGCCAAAAGCGATCAACAAAATCCATCTGAAATTGCTGCAGAGGAAAGTGGTAAAAAGATGTCAGAAAATGATGAGAATGATAAAGAAAACAGTGGGGTGAGTGAAGGAAAAGAGACTGAGGGCGAGGAAAAGAGTAAAGAAACTGATGAAAAAAATTTCGCTACTGCTGATAAGGACAACAAGTTTGTTGTCTCACGAGAGGACTTGAGGGTTGTCTTTGAGAAGTTTGGTACTGTGAAGTACATTGATTTCAAGATTGGGGCAGAGTCAGGATACATTCGATTTGAAGAACCTGAAGGTGCTCAGAAAGCTCGTGCAGCTGTAGTTCTTTCTGAAAAGGAGGGCTTAGTTGTGAAGAATTGTATTGCTATTCTGGAACCAGTGACTGGTGAGGCAGAGAGAGAATACTGGAGCCTGCTTCGTGGTAATCAAGAAAAGCACAGAGGATGTATGAATAACAGAGGAAGGGGAAGACAGCATGGGAGAGGAGGAAAATTCAACCGGTCCAGAGAGAATGAATCACTAGATCGCCCAAATAAAGTTAGAAAGTTTTAA 1335 0.421 MVTASLDDETAKKVVRQVEFYFSDSNLPRDNFLKKTISESEDGMVSLALICSFNRMRKHLKLEEVKPVEVTEDTVKAVAQALKDSALVRVSEDGNKVGRSTELLKPEEVIEQVEIRTIAASPFQYDVKLEDVEALFGQYAKVNSVRLPRHVGDKRFFCGTALIEFSSDEEMKFFLKENLVYAGAELELKPKKDFDVQREKELEEHEKFRPLVGLDHQNNTNTEAVYPKGLLIAFKLKTISDKVPSEQNNPDQQTNDAHDIAKSDQQNPSEIAAEESGKKMSENDENDKENSGVSEGKETEGEEKSKETDEKNFATADKDNKFVVSREDLRVVFEKFGTVKYIDFKIGAESGYIRFEEPEGAQKARAAVVLSEKEGLVVKNCIAILEPVTGEAEREYWSLLRGNQEKHRGCMNNRGRGRQHGRGGKFNRSRENESLDRPNKVRKF 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00714 444 ProSiteProfiles La-type HTH domain profile. 4 109 IPR006630 -
Phco2g00714 444 CDD LA_like_plant 10 99 - -
Phco2g00714 444 ProSiteProfiles xRRM domain profile. 308 433 IPR014886 GO:0003723
Phco2g00714 444 MobiDBLite consensus disorder prediction 275 312 - -
Phco2g00714 444 SMART la 8 100 IPR006630 -
Phco2g00714 444 FunFam La protein 2 6 106 - -
Phco2g00714 444 SUPERFAMILY "Winged helix" DNA-binding domain 7 102 IPR036390 -
Phco2g00714 444 MobiDBLite consensus disorder prediction 408 444 - -
Phco2g00714 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 176 IPR000504 GO:0003723
Phco2g00714 444 Gene3D - 109 207 IPR012677 -
Phco2g00714 444 Gene3D - 294 416 IPR012677 -
Phco2g00714 444 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Phco2g00714 444 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Phco2g00714 444 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Phco2g00714 444 Pfam La domain 14 83 IPR006630 -
Phco2g00714 444 SMART rrm1_1 311 379 IPR000504 GO:0003723
Phco2g00714 444 SMART rrm1_1 117 189 IPR000504 GO:0003723
Phco2g00714 444 MobiDBLite consensus disorder prediction 242 272 - -
Phco2g00714 444 SUPERFAMILY RNA-binding domain, RBD 108 193 IPR035979 GO:0003676
Phco2g00714 444 Gene3D - 6 106 IPR036388 -
Phco2g00714 444 Pfam RNA binding motif 324 416 IPR014886 GO:0003723
Phco2g00714 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 201 IPR000504 GO:0003723
Phco2g00714 444 SUPERFAMILY RNA-binding domain, RBD 322 411 IPR035979 GO:0003676
Phco2g00714 444 PANTHER LUPUS LA PROTEIN-RELATED 11 311 IPR045180 -
Phco2g00714 444 MobiDBLite consensus disorder prediction 242 312 - -
Phco2g00714 444 CDD RRM1_La 117 189 - -
Phco2g00714 444 MobiDBLite consensus disorder prediction 424 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00714 Phco-Chr2 7431663 7436190 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00714 2 7431663 7436190 Phco2g00714 2 7431663 7436190 ECH
Phco2g00714 2 7431663 7436190 Phco7g00900 7 7220454 7223437 PCT