Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco7g00871 | ATGGAATGGAAGAAGTGTTATTTGGATGTGATATTGGTGCCCTTAGGATTTCTTATGAGCTTTGGCTACCACTTCTGGCTCTGGCACACTGTTCGAACTCATCCACACACAACTATCATTGGCATCAATGCTAGTGGAAGACGCAATTGGGTTGCTACCATAATGAAGGACAACGACAAAAAAAACATCCTAGCTGTTCAATCACTTAGGAACACAATCATGGGTGCGACCCTAATGGCCACAACCTCTATTCTCCTATGCTCGGGCTTAGCAGCAATCATAAGCAGCACCTACAGTGTGAAAAAGCCACTTGAGGACACAGTTTATGGGGGGCATGGGGAGTTCATGATATCACTAAAGTATGTGACTTTGCTCTCTATTTTCCTCTTCTCATTCTTCTGCCACTCCTTGTCCATAAGGTTCATAAATCAAGTGAACATCCTCATCAACACCCCACAGGACCCCATGTCCTTAGTGACTCCTGAATATGTGAATGAGATATTGGAGAAAGGCTTCCTTCTAAACACTGTTGGAAACAGACTCTTCTACGCTGCACTTCCTCTTCTGCTTTGGATATTTGGCCCTGTCTTGGTCTTCTTGTGCACTCTCACTATGGTTCCAGTGCTTTACAATCTTGACTTTGTGGTTAGTTCCAAGGGAAAAATGGACGTAAATGAAAATAGACATTTTGGTTGGCACCCTTCTATTTTTTCCCAAACCAAACTGCGCAATCTTAATTCTCTCATAGCCTCTTCAACAAAGGAATTCTACGGTGCGCCCGATAAGAGGTTTCTCAAAGCAGGAGCAATGTCTTCCTCTCATCTTCCTGCCACTACTGAGTCTATTGCTCTGGCAAATGAGGCCGCAAACCCAACTGAGGCCATCTCCATTCTTTATCGGGTACTTGATGATCCTTCTTCTTCACCAGATGCTCTGCGAATGAAAGAGCAAGCAATCACACTCCTCACTAAGCATCTCACGGAAGAGAATAGGGGAGAGGATCTGCGCAGCCTTCTCACTCAGTTGAGGCCATTTTTCTCATTGATACCCAAGGCAAAAACTGCAAAGATTGTTAGAGGAATAATTGACTCAGTTGCTAAAATACCAGGAACGTCTGATCTACAGATTGCACTCTGTAAGGAAATGGTGCAATGGACTCGTGCTGAAAAGCGTACTTTTCTGAGGCAACGAGTTGAGGCAAGACTTGCAGCACTTTTGATGGAAAATAAGGAGTATTCTGAAGCTTTGACTCTTCTTTCTAGCTTGGTCAAAGAGGTTAGGAGACTAGATGATAAACTTCTTCTTGTAGACATAGATTTGCTGGAGAGCAAGCTGCATTTCTCCTTAAGAAACCTTCCTAAGGCAAAAGCTGCTCTCACGGCTGCAAGAACAGCTGCAAATGCTATTTATGTGCCTCCAGCTCAACAAGGTGCCATAGATCTGCAGAGTGGAATACTTCATGCGGAGGAGAAGGATTATAAAACTGCTTATAGCTATTTCTTTGAAGCTTTTGAATCATTCAATGCTCTTGATGACCCCAAGGCTGTCTTTAGCCTGAAATATATGTTGTTGTGTAAGATCATGGTGAATCAAGCTGATGACGTAGGGGGAATTATTTCCTCTAAAGCAGGACTGCAATATCTTGGGCCTGACTTGGATGCTATGAAAGCTGTTGCTGATGCACATTCTAAGCGCTCCCTTAGGTTGTTTGAAACTGCTTTGCGGGACTACAAGGCACAGTTGGAGGAAGACCCAATTGTCCACAGGCACCTTTCATCCTTGTACGATACCTTACTGGAACAGAATCTCTGCAGATTGATTGAGCCTTTCTCAAGGGTTGAGATTGCACATATTGCTGAACTTATTGAACTTCCCGTTGATCATGTGGAGCGGAAGTTGTCTCAGATGATTTTGGACAAGAAGTTTGCTGGAACATTGGATCAAGGTGCTGGATGCCTTGTCATATTTGACGATCCCAAGACTGATGCTATATACCCTGCAACTTTAGAGACCATTTCCAATATTGGGAAAGTTGTCGACAGTCTTTATGTTAGGTCTGCCAAGATAATGTCATGA | 2076 | 0.435 | MEWKKCYLDVILVPLGFLMSFGYHFWLWHTVRTHPHTTIIGINASGRRNWVATIMKDNDKKNILAVQSLRNTIMGATLMATTSILLCSGLAAIISSTYSVKKPLEDTVYGGHGEFMISLKYVTLLSIFLFSFFCHSLSIRFINQVNILINTPQDPMSLVTPEYVNEILEKGFLLNTVGNRLFYAALPLLLWIFGPVLVFLCTLTMVPVLYNLDFVVSSKGKMDVNENRHFGWHPSIFSQTKLRNLNSLIASSTKEFYGAPDKRFLKAGAMSSSHLPATTESIALANEAANPTEAISILYRVLDDPSSSPDALRMKEQAITLLTKHLTEENRGEDLRSLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSDLQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMENKEYSEALTLLSSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALDDPKAVFSLKYMLLCKIMVNQADDVGGIISSKAGLQYLGPDLDAMKAVADAHSKRSLRLFETALRDYKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPVDHVERKLSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNIGKVVDSLYVRSAKIMS | 691 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco7g00871 | 691 | Pfam | 26S proteasome regulatory subunit RPN6 N-terminal domain | 287 | 397 | IPR040773 | - | |
| Phco7g00871 | 691 | SUPERFAMILY | "Winged helix" DNA-binding domain | 583 | 665 | IPR036390 | - | |
| Phco7g00871 | 691 | Coils | Coil | 395 | 415 | - | - | |
| Phco7g00871 | 691 | Gene3D | - | 315 | 690 | - | - | |
| Phco7g00871 | 691 | PANTHER | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 | 290 | 687 | - | - | |
| Phco7g00871 | 691 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 589 | 672 | IPR000717 | - | |
| Phco7g00871 | 691 | Pfam | PCI domain | 554 | 655 | IPR000717 | - | |
| Phco7g00871 | 691 | FunFam | 26S proteasome non-ATPase regulatory subunit 11 | 315 | 690 | - | - | |
| Phco7g00871 | 691 | SMART | PCI/PINT associated module | 412 | 588 | - | - | |
| Phco7g00871 | 691 | Pfam | Protein of unknown function, DUF599 | 11 | 215 | IPR006747 | - | |
| Phco7g00871 | 691 | Pfam | 26S proteasome subunit RPN6 C-terminal helix domain | 662 | 687 | IPR040780 | - | |
| Phco7g00871 | 691 | ProSiteProfiles | PCI domain profile. | 492 | 660 | IPR000717 | - | |
| Phco7g00871 | 691 | SUPERFAMILY | TPR-like | 398 | 592 | IPR011990 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco7g00871 | Phco-Chr7 | 6923842 | 6931477 | Dispersed/Transposed |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco7g00871 | 7 | 6923842 | 6931477 | Phco2g00880 | 2 | 10605942 | 10607207 | PCT |