Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00880 ATGGCTGTTTTTCTTCCTGCCACAAGAGAGTCAATTATTCTGGCACTGCGAGCCCATCACCCATATGAGACCATATGCCTTTTTTATCAGATACTTGAGGATCCTTCTTTTACCCCGTATGCTGTGAGCATGAAAGTGCTAGCCATTAATAACCTCATTGACGAGTTCATGGAAAGGAAAATGCCAGAGGATCTGTTCGGCCTTTTGACTCGGTTGAGGCCCTTCTTTTCCTCGATTAACAACGCAAAAACGGCAAAGATTGTGTGGGACATAATGGATTCTCTTGGTAAAATGCCAGGGACTTCTGATCTACAAATTGAACTCTGCAGAGAAACGGTGCAATGGGCTCGTGCTGAAAGGCGTACCTATCTGAGGCGGCGACTTGAGGCAAGACTTGCTGCACTACTTCTGGAAAATAAGGAGTACTTGGAAGCTTTGACTCTCCTCAGTGGCCTGGTCAAGGAGGTTAGAAGACTAGATGACAAGCGTCTACTTGTAGACATACACTTGCTTGAAAGCAATCTACACTCTTCCTTAAGAGACCTTCCAAAGGCAAAGGCCGCCCTAATAGCTGCAAGAACAGCTGCAAATGCTGTTTACCTTCCTCCAGCTCAACAAGCTGCCATGGATTTTCAGAGTGGGATTCTTCTTCTCGAGGAGAAGGATTACAGAACTGCAGATAGTTATTTCTTTGAAGCTTTTGAGTCTTTCACTGATATTGAGGACCTCAAGGGGATCATTAGCCTGAAATACATGCTGTTGTGTATGATAATTCTGGATCAAGCTGATAATGTGGCCGATATAATATCTAATGAAGTTGACTATCACAATCGTGGACGCGACTTGGATGCCATGGAAGCCATAGCAAATGCTCGTTCCAAGCGATCTCTGACTTTATTCGAAATCGCTTTGCGAGATTATAAGGCTCAGTTGGAGGAAGATCCAATTGTCAACAGACACCTTTCATCCCTGTATGACACTCTTCTGGAAAACAACCTTTGCAGATTGATTGAACCTTTCTCAAGGGTTGAGATTGCACACATATCTGAACTGATTAAACTTCCTGTTGATCATCTGGAGCGAAAGTTGTCTCAGATGATTTTGGACAAGAAGTTCACCGGGATAATGGATCAGGGAGCTGGATGCCTTGTCATATTTGATGATCCCAAACTGCATCCCATATACCCTGAAACCTTAGAAACCATTCTTAACGCTGGTAAAGTCGTGGACAGTCTTTATGCTAGGTCTGCCAAGATAATTTCATGA 1266 0.4368 MAVFLPATRESIILALRAHHPYETICLFYQILEDPSFTPYAVSMKVLAINNLIDEFMERKMPEDLFGLLTRLRPFFSSINNAKTAKIVWDIMDSLGKMPGTSDLQIELCRETVQWARAERRTYLRRRLEARLAALLLENKEYLEALTLLSGLVKEVRRLDDKRLLVDIHLLESNLHSSLRDLPKAKAALIAARTAANAVYLPPAQQAAMDFQSGILLLEEKDYRTADSYFFEAFESFTDIEDLKGIISLKYMLLCMIILDQADNVADIISNEVDYHNRGRDLDAMEAIANARSKRSLTLFEIALRDYKAQLEEDPIVNRHLSSLYDTLLENNLCRLIEPFSRVEIAHISELIKLPVDHLERKLSQMILDKKFTGIMDQGAGCLVIFDDPKLHPIYPETLETILNAGKVVDSLYARSAKIIS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00880 421 Coils Coil 125 145 - -
Phco2g00880 421 ProSiteProfiles PCI domain profile. 223 390 IPR000717 -
Phco2g00880 421 FunFam 26S proteasome non-ATPase regulatory subunit 11 45 420 - -
Phco2g00880 421 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 20 128 IPR040773 -
Phco2g00880 421 SMART PCI/PINT associated module 142 318 - -
Phco2g00880 421 Pfam PCI domain 284 385 IPR000717 -
Phco2g00880 421 Gene3D - 47 420 - -
Phco2g00880 421 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 65 417 - -
Phco2g00880 421 SUPERFAMILY "Winged helix" DNA-binding domain 313 392 IPR036390 -
Phco2g00880 421 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 319 402 IPR000717 -
Phco2g00880 421 SUPERFAMILY TPR-like 130 319 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00880 Phco-Chr2 10605942 10607207 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00871 7 6923842 6931477 Phco2g00880 2 10605942 10607207 PCT