Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00844 ATGATAACGTGTTACAGATTTGAAGGCAGTACGCCATTGATGGATGAATATTCTGGTAAAAGAGTTATTGATGGGATGGTAGTCCCTAGAAAGGGGGTCGGCCATGTGTTTAGAGACACTGCTAATGCTAAAGATCGAAATGGTCAGGTGTGCAGCCGCCTTACTTGCAGTAGCAGAGTCAACACCTCTAAAGGTGCTCAAATTGGTTCTTCTGAAAAAGGAAAATCTTTGAAACCTTCTATCCAGTCTTCTTCCGCTGGCAAGGAAGCAGTTGGAAGCTCCTCTAGAACTTTTTCCAAGACTAGTAGCCCTGGAAAACCGCTTATAAAGCCTCGGAAAAAATCATCATCTCAGTTAGAGACAGATTCATCTGAAACTAGTAGTGTACAGGATGAATCAGAAGTTTCAAAACTCGCCCCTCCCCCTGAAAAAAGCCAGACAGGGCTTCAAGCTGAAATGGAAAGTACAGTGTCTGGTACCGTCATGATGGAAGTGGGAAGCTCAACTGTAGTATCCAATTCAAGATCTCGGAGGAATTTTCATCCAAAGCCTGGAATTAGCGGTCAGGAAATTAAAAACACTGGTCCAGTGATGCGTGCTGGTACCAGTAGGTATGGATTTAGAAACCTCAAATGCAACTCTATTTCTGATGTCCTCCCTGCCGGCTGTTCGCCTTCAGATTCAACCCTTAACAGAAGGAAGGATATGATAAAAAAGAGGAATTGTGAAGGGGAAGGTAGTTCCTCTGCTAGAGGGAAGAAAATGAGTGGGTCTTCATTAGAAGGACGGAATTCTGGTTCCAGAAATGGCATATCTATTTCTGATTCAAGAATATCTAGGAATGCTCCTCCTCACAGGGACAGGTCTGACTGCAACATGGCACCAGTTAGAACTCGAAAATCAATTAGTGGTCATGCCAGGGGAAGGCTTTCTAGCCAAGGAAATGCAAATCCCGTGTCACCCAATCAGTCCCCTGTCACAATACCTTCTTTGCCTCATTCTGGTGGTCGTAATGCTCCTGGTGTATCACATCGTACTTCTGTAGATAGTTCCTTAAGTTGTCCTAGCTCTCATAGTAGACCGGGTACTGGAAGTGAGGAGTTATATGGTGTTATGCCTGGATCTCCTTCAGAATATGGCCTCACTCATTCTATAATGAATCTGGATAGCTTTCGACGGCGTTACAACGTGGATAGTATTGCTGAGGTATTGTTGGCACTTGAGAGGATTGAACACGATGTTGAGCTAACACATGAGCAAATTCGTTTACTGGAATCCAACTTGTTCCTTACTGGGCTTAACTTCTACGATCCACACAGAGACATGCGATTGGACATTGATAACATGTCTTATGAGCAACTGCTGGCTCTGGAAGAGAGGATGGGTTCTGTGAGCACAGCTCTAACAGAGGAAGCGCTATCGGACTGCCTAAAGAAAAGCTTCTTCCAGTCCTCACCCTCTGAAACTGCAGTCGACAGTTGCAATGAAGCCAAGGATGATACCAAATGCAGCATTTGCCAGGAGGAATATGTGGTTGAGGATGAATTGGGGAGTTTGCATTGCGAGCACATGTATCATGTGGTTTGCATACAGCAGTGGCTTCGGCTGAAGAACTGGTGCCCTATTTGCAAAGCATCAGTGGTACTGTCAAATTCATCCCCATCTCAATGA 1671 0.4476 MITCYRFEGSTPLMDEYSGKRVIDGMVVPRKGVGHVFRDTANAKDRNGQVCSRLTCSSRVNTSKGAQIGSSEKGKSLKPSIQSSSAGKEAVGSSSRTFSKTSSPGKPLIKPRKKSSSQLETDSSETSSVQDESEVSKLAPPPEKSQTGLQAEMESTVSGTVMMEVGSSTVVSNSRSRRNFHPKPGISGQEIKNTGPVMRAGTSRYGFRNLKCNSISDVLPAGCSPSDSTLNRRKDMIKKRNCEGEGSSSARGKKMSGSSLEGRNSGSRNGISISDSRISRNAPPHRDRSDCNMAPVRTRKSISGHARGRLSSQGNANPVSPNQSPVTIPSLPHSGGRNAPGVSHRTSVDSSLSCPSSHSRPGTGSEELYGVMPGSPSEYGLTHSIMNLDSFRRRYNVDSIAEVLLALERIEHDVELTHEQIRLLESNLFLTGLNFYDPHRDMRLDIDNMSYEQLLALEERMGSVSTALTEEALSDCLKKSFFQSSPSETAVDSCNEAKDDTKCSICQEEYVVEDELGSLHCEHMYHVVCIQQWLRLKNWCPICKASVVLSNSSPSQ 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00844 556 ProSiteProfiles Zinc finger RING-type profile. 503 544 IPR001841 -
Phco7g00844 556 Pfam Ring finger domain 502 544 IPR001841 -
Phco7g00844 556 Coils Coil 407 427 - -
Phco7g00844 556 MobiDBLite consensus disorder prediction 220 371 - -
Phco7g00844 556 SMART ring_2 503 543 IPR001841 -
Phco7g00844 556 SUPERFAMILY RING/U-box 497 549 - -
Phco7g00844 556 MobiDBLite consensus disorder prediction 63 154 - -
Phco7g00844 556 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 465 548 IPR013083 -
Phco7g00844 556 MobiDBLite consensus disorder prediction 120 134 - -
Phco7g00844 556 MobiDBLite consensus disorder prediction 340 363 - -
Phco7g00844 556 MobiDBLite consensus disorder prediction 251 279 - -
Phco7g00844 556 MobiDBLite consensus disorder prediction 305 331 - -
Phco7g00844 556 MobiDBLite consensus disorder prediction 280 294 - -
Phco7g00844 556 MobiDBLite consensus disorder prediction 63 104 - -
Phco7g00844 556 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 87 547 IPR045191 GO:0061630
Phco7g00844 556 MobiDBLite consensus disorder prediction 231 247 - -
Phco7g00844 556 MobiDBLite consensus disorder prediction 168 197 - -
Phco7g00844 556 FunFam E3 ubiquitin-protein ligase arkadia 465 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00844 Phco-Chr7 6679590 6682109 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00689 2 7016962 7022181 Phco7g00844 7 6679590 6682109 PCT