Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00689 ATGTTGTCTGCCTCAGCATTGGATCAATCACACACGCCAGAGGAGAAGAACATCACCACCACCAACAATAGCAGCAGCAGCAGAATAAGATTTGGTGGTAGTAAGCAATTGATGGATGAGTATTCTGGTCGAAGAGGTGTGGAGGGGGTGGTAGTCCCTAGAAAGGGGTTGAGCCATGTACTTAGAGATACTGCTAATACTAGAGAACGAACAGGTCAAGTTTGCAGCAAATTGAGTTGCAGTAGTAGAGCCAATATTCCCAAAGTTTCTCAAGTCAGATCTTCTGAAAAGGGTAAATCTCCGAGGCCTTTATCCCATTCCTCTTCAAGTAGCAAGGAACCAATTGGAAGTTCCTCTAGATCTACTAGTAACCCAGCAAAACGAATTATGGAACCTCGGAAAATATTATTCTCTCAGTTTGAGGCAGATTCATCTGAAAGTAGTAGTGTACAGGATGAACCAGAATTTTCAGAGCTCATCCCTCCAGCAGAAGAAAATCAGAGAGGGCCTAAATCCAGGGGGGGAAGTTCAGAGTCTAGTTATGCGAGTCTGATGGAAGTAGGAAGCTCCAGTACAGTATCAAATAATAGATCTCCAAGGAATTTAAATCAAAGACCTGGACTGCGTGGACAAGAAATCAAAAGCAGTGGTCCAGTGAGACATGCTGTTTCAAGCAGGAATGGATTGAGGAACATCAGATGCAACACTATATCTGATATCATCCCACCTGGTTGTTCATCATCAGATTCAAGTCTTAATAGAAGGAAGGATACAATAAAAAAGAGAAACTGTGAAGGGGAAAGTAGTTCCACTGTTAGAGGGAAGAATATCATTGGGTCTTCACTGGAAGGACGGAATTCTGGCTCCAGAAATGGCATATCTATATCTGATTCAAGAAGAACAAGAAATACGCCTTCTAACCGGAATACCAGTATGGCACCAGTAAGAACTCAAAGATCAGTTAGTGGTCATGCCAGGGGAAGGTTTTCTAGCCAAGGAAATGAAAATCCTTTGGCAACCAGTGAGTTCCCTCATTCTGGTGATGTTAATCCTCATGGCATTTCGTGTCAGATTTCTATGGAGACTCCTTTAACATGCTCAAGCTCTTGTGGTAGACCAGGCAATAGCAGTGAGCAGTTACCTTGTGTCACACCTCTGTCTCCTGAAGAAGATGACATCACTCATTCTCTAATAATTGATGGGGACGGCTTTCGACATTACAATATGGACAGTATTGACGGGATATTATTGGCCCTTGAGAGGATTCAACAAGGTCGAGAGCTACCCCATGAGCAAATTCTTTTGTTCGGGACCAACATGTTTGATAATGGATTAAACTTTTATGATCACCACAGAGACTTGCGGTTGGATATTGATGACATGTCCTATGAGGAACTCTTAGCTCTAGAAGAGAGGATGGGAACTGTGAGCACAGCTCTATCAGAGGAAGCACTTGCAGAATCTCTTAAAAGAAGTATATATCAGTCTCCACCTACACATGATACAGATGAGAACTGTAATGAGGATAAGGATGACATCAAATGCTGCATTTGCCAGGAGGAATATGTTATTGGTGATGAACTTGGGGATCTGCCATGCAAGCATAGGTTTCATGTGGTTTGCATAGAGGAGTGGATGGGGCTGAAGAACTGGTGCCCTATTTGTAAATTATCTGCAGCACTGTCTAATAATTCATCTTCACCTCATTGA 1710 0.4263 MLSASALDQSHTPEEKNITTTNNSSSSRIRFGGSKQLMDEYSGRRGVEGVVVPRKGLSHVLRDTANTRERTGQVCSKLSCSSRANIPKVSQVRSSEKGKSPRPLSHSSSSSKEPIGSSSRSTSNPAKRIMEPRKILFSQFEADSSESSSVQDEPEFSELIPPAEENQRGPKSRGGSSESSYASLMEVGSSSTVSNNRSPRNLNQRPGLRGQEIKSSGPVRHAVSSRNGLRNIRCNTISDIIPPGCSSSDSSLNRRKDTIKKRNCEGESSSTVRGKNIIGSSLEGRNSGSRNGISISDSRRTRNTPSNRNTSMAPVRTQRSVSGHARGRFSSQGNENPLATSEFPHSGDVNPHGISCQISMETPLTCSSSCGRPGNSSEQLPCVTPLSPEEDDITHSLIIDGDGFRHYNMDSIDGILLALERIQQGRELPHEQILLFGTNMFDNGLNFYDHHRDLRLDIDDMSYEELLALEERMGTVSTALSEEALAESLKRSIYQSPPTHDTDENCNEDKDDIKCCICQEEYVIGDELGDLPCKHRFHVVCIEEWMGLKNWCPICKLSAALSNNSSSPH 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00689 569 SMART ring_2 515 555 IPR001841 -
Phco2g00689 569 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 477 560 IPR013083 -
Phco2g00689 569 MobiDBLite consensus disorder prediction 85 126 - -
Phco2g00689 569 MobiDBLite consensus disorder prediction 1 49 - -
Phco2g00689 569 ProSiteProfiles Zinc finger RING-type profile. 515 556 IPR001841 -
Phco2g00689 569 MobiDBLite consensus disorder prediction 1 32 - -
Phco2g00689 569 FunFam E3 ubiquitin-protein ligase arkadia 477 561 - -
Phco2g00689 569 MobiDBLite consensus disorder prediction 141 224 - -
Phco2g00689 569 SUPERFAMILY RING/U-box 509 559 - -
Phco2g00689 569 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 94 559 IPR045191 GO:0061630
Phco2g00689 569 MobiDBLite consensus disorder prediction 237 355 - -
Phco2g00689 569 Pfam Ring finger domain 514 556 IPR001841 -
Phco2g00689 569 MobiDBLite consensus disorder prediction 237 252 - -
Phco2g00689 569 MobiDBLite consensus disorder prediction 253 268 - -
Phco2g00689 569 MobiDBLite consensus disorder prediction 269 343 - -
Phco2g00689 569 MobiDBLite consensus disorder prediction 85 129 - -
Phco2g00689 569 MobiDBLite consensus disorder prediction 170 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00689 Phco-Chr2 7016962 7022181 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00689 2 7016962 7022181 Phco2g00689 2 7016962 7022181 ECH
Phco2g00689 2 7016962 7022181 Phco7g00844 7 6679590 6682109 PCT