Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00828 ATGACATTTACATCCAAACCCACCCAACCTCTGTCCCCTTTCAATCCCATCTCTCTCTCCTTTCTCTCACTCTCACCCTTCCCTCTTCTCTCTTCCCTCTTCCTTCTTCTGCTTCATCAAAGGTACTTCTTTGATAGCAGCTTCCTTCCTCTCCTCTCTGTCTCTCATATCTCTCTCTCAGGGTTCTACGCAGCTCACCCTTTTGTCGAATTCGGTTTATGTCTTTTTCTGCGCTGCAATGATCGCCCAAACCTGGGTTTTGATAATGTGTTGTATCTGTACTCTAGAATGAGTAGACCAACGACACGAAGTAAAAATAAAAGACAGAGACATGGGGATGATGGCAACGGGACTGCTGAAATATGGAGGAAAATTCACAACAGTGGCGTGGTTGCTGAGGATGATATGAATCAGTTATATATGATCTGGAAGCCAGTTTGTTCAGGCTGTCGTGTCAACACCAAAGACAACCCTAATTGTTTCTGTGCGTTGATTCCACCTCAAAATGGAGCACGGAAATCTGGGTTATGGCAAAAGATGTCAGATTTTATTGAAAGTCTTGGCCATGATCCAACTAAGGATCTTCGTGCATCTGCCGATTCTCCTGCAGGTCTCACAAATCTTGGGGCAACATGCTATGCCAACAGTATACTTCAGTGTTTGTACATGAATCAATCTTTTCGAGAAGGCATCTTTTCTGTAGAACAAGATGTTTTAGAACAACAGCCTGTGCTGGATCAGTTGACTCGACTTTTTGTGCAGTTGCATGTTAGCAAAATGGCTTTCATAGATTCTTCTCCATTTGTAAGAACGCTTGAATTAGATAATGGAGTTCAGCAGGATAGCCATGAATTTCTGACATTGCTTCTCTCTTTGCTCGAGGGTTGTTTAAGTCATTCGAAAGTGCCAAAGGCAAGAACTATAGTGCAAGATCTTTTTCGGGGAAGTGTGTCTCATGTGACAACGTGTTCACAATGTGGAAGAGACTCTGAAGCTTCTTCCAAGATGGAAGATTTCTATGAACTGGAGTTGAATGTCAAGGGATTGAAAAGTTTAGATGAGAGCCTAGACGAATATCTCACTGTTGAAGAGCTTAATGGAGACAATCAATATTTTTGTGAGTCATGTAAAAGAAGAGTTGACGCTACTCGCAGCATCAAACTGTGTACATTGCCCAAAGTACTTAATTTTCAACTCAAACGTTACGTCTTCCTTCCTAAGACTACAACAAAGAAGAAAGTTTCTTCTGCTTTCTCATTTCCTGCTGAACTTGATATGCGGCATAGAATGTCTGAGTTGTCTCAGTTTGACTTGGTGTATGACTTGTCAGCTGTACTGATTCACAAGGGAACTGGTGCTAATAGTGGCCATTACATTGCTCATATTAAGGATGTAAACACTGGGCAATGGTGGGAATTTGATGATGAGCATGTTACTAATTTGGGTTGTCATCCATTTGGCGAAGGGTCTTCAAATTCTACCTCTAAATCAATCAAGACTGATGCAATTCATTCTAATTGTTCTCAAGCGATAATAGCTGACAGTAATGGAAATGGTTTGAATGCCTCTCATTCACAATCTTCACTTGTGGAGACATTTTTGTCTAGTGATGCGTACATGTTGATGTACCATCTTAAACATACAAAAAATGTTGGTGAAATTGGTAGTGTAATTTGTGGTGCTAAGCATGATGAAAGAGAGGGTGTGGAAGTTGCTTTGCAAAATGGTGCTTCTCTTGCATCTTATCTTTGTAATGAGATTCAAAATTTCAATGTTTCATATGATGAAGCTTGTCAGGAGTACATTAACAAGAAAGAGTTGGAATTGGGTCGTATTACTGGAAGGAGACAGGAGGTTCGATCTGTTCTAGCTGAAGCTCCTGTTCAACCACTGGAGCAACCATTTTATTGGATTTCTAGTGAATGGCTTCGCCAGTGGGCTGACAACATTATTCCAGTTCCTCTTGACAACTCGTCTATCCAATGCTCACATGGGAAAGTCCCAGTTTCAAAGGTTACCTCAATGAAGCGATTGTCTGCTAAAGCATGGGATACCTTGTTCTCCAAGTATGGTGGGGGCCCAGCATTATCTCATGATAACCACTGCTTGGATTGCCTGATTCATGGGGCTATGACAGTGGTTTCAGCTGACACCTATCGGGATAGAAGAGAATCAATGAAATCACTTGCTCGGGACATTCTAGATGGAAACTGCCTGGATGGAAAGTATTACATATCCAGACCATGGTTGCAACAGTGGTGGAAAAGAAAAGTCCTTGATGCTCCCTCTGAAGCTGATGCTGGACCAACTGCAGCCATTAGTTGTCCACATGATGAACTGTTGCCTGAGAAAGCTCCTGGTGCTAAGCGGGTGCTTATTCCTGAGAGTTTTTGGTTCTTCTTATATGAAGATGCTGTTTCTGTAAAGCCTGATGATCCTTTGGGTGGCCCAAGTTTTTCTTCAGATTCCGAAGAGTGTTCCCAATGCAGTAATGAATTATCAGAAGTAGCATGCTTGGAGGACTCCTTGAGATTGGTTAAACAAAAGCAACGTCAGAATCATGAGAAATTATTCCAGGCTAAAAGTCTGCCACTTTCTCTAAACTGCAAGTATTTCTTGGTGCCTTCATCATGGATTTCAAAATGGAGAAATTACATCAATCCAACCCTGAAGAATTCAGATAAACCTGAAACTTTAGATGGGGCAATTGATTCATTGTTATGTGAAAAGCACTCACAGCTTCTTGAAAGACCTCCTGAGTTGGTTTTCAGACGGGGTGCCATAATCCAGAGGGAGTCTTCTGTAGGTGGCTTAACCATTGTATCTGAGAATGATTGGAAATGCTTTTGTGAAGAATGGGGTGGTATTGAGAACAAAGGAATATTTGCAACTATTGATAACACTAATGATCCAGACAATGTTTTGACTGGATCCAATGAAGAGATGCTGATATGTAAGGATCAGTTGGGCACAGCAGATAAAATGAATTATGATAATGGAACTGGACAAATCTTCATCAAGACTTGTCCTAAGGTTTGTGAAAGTTGCATTGGAGAAAAAGAGAGCTGTAAACTAATGCAGAAGCTTAATTATTGCAATGAGGACATATGTGTAATTCTTGTTCGTGGTAAGGAGGTACCAAGATCAATGTTGGAGGCTTCGAAAGGGTTTGTTGAAACAGATCGGCGAGTTTCCAAGCGTTCCCGTAAGACTAAAAACGGGAGTTCAATTAGTCTAAAAGTTTCTGCTTCAACATCTTTGTATCAGCTGAAAATGATGATATGGGAATCCTTTGGGGTTGTTAAGGAAAACCAAATACTGCATAAAGGTGATAGGATAATTGATAGTGATAATGAATGTGTTACCCTCGCGGATGTGAACATTTTTGCCGGAGATCAGATTATAGTGAGAGACTCTGAGATCCACGAAAATCGAGATATTGCAGATGAGCTTTGCGACGATAAAATGGATCTGCAGCATACCGAGGAGGGGTTCCGTGGAACGCTACTCACAACAAATGTTTCATCCCAGGTTGTTTAA 3540 0.4119 MTFTSKPTQPLSPFNPISLSFLSLSPFPLLSSLFLLLLHQRYFFDSSFLPLLSVSHISLSGFYAAHPFVEFGLCLFLRCNDRPNLGFDNVLYLYSRMSRPTTRSKNKRQRHGDDGNGTAEIWRKIHNSGVVAEDDMNQLYMIWKPVCSGCRVNTKDNPNCFCALIPPQNGARKSGLWQKMSDFIESLGHDPTKDLRASADSPAGLTNLGATCYANSILQCLYMNQSFREGIFSVEQDVLEQQPVLDQLTRLFVQLHVSKMAFIDSSPFVRTLELDNGVQQDSHEFLTLLLSLLEGCLSHSKVPKARTIVQDLFRGSVSHVTTCSQCGRDSEASSKMEDFYELELNVKGLKSLDESLDEYLTVEELNGDNQYFCESCKRRVDATRSIKLCTLPKVLNFQLKRYVFLPKTTTKKKVSSAFSFPAELDMRHRMSELSQFDLVYDLSAVLIHKGTGANSGHYIAHIKDVNTGQWWEFDDEHVTNLGCHPFGEGSSNSTSKSIKTDAIHSNCSQAIIADSNGNGLNASHSQSSLVETFLSSDAYMLMYHLKHTKNVGEIGSVICGAKHDEREGVEVALQNGASLASYLCNEIQNFNVSYDEACQEYINKKELELGRITGRRQEVRSVLAEAPVQPLEQPFYWISSEWLRQWADNIIPVPLDNSSIQCSHGKVPVSKVTSMKRLSAKAWDTLFSKYGGGPALSHDNHCLDCLIHGAMTVVSADTYRDRRESMKSLARDILDGNCLDGKYYISRPWLQQWWKRKVLDAPSEADAGPTAAISCPHDELLPEKAPGAKRVLIPESFWFFLYEDAVSVKPDDPLGGPSFSSDSEECSQCSNELSEVACLEDSLRLVKQKQRQNHEKLFQAKSLPLSLNCKYFLVPSSWISKWRNYINPTLKNSDKPETLDGAIDSLLCEKHSQLLERPPELVFRRGAIIQRESSVGGLTIVSENDWKCFCEEWGGIENKGIFATIDNTNDPDNVLTGSNEEMLICKDQLGTADKMNYDNGTGQIFIKTCPKVCESCIGEKESCKLMQKLNYCNEDICVILVRGKEVPRSMLEASKGFVETDRRVSKRSRKTKNGSSISLKVSASTSLYQLKMMIWESFGVVKENQILHKGDRIIDSDNECVTLADVNIFAGDQIIVRDSEIHENRDIADELCDDKMDLQHTEEGFRGTLLTTNVSSQVV 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00828 1179 Gene3D - 604 702 IPR035927 -
Phco7g00828 1179 SMART dusp 628 699 IPR006615 GO:0004843
Phco7g00828 1179 ProSiteProfiles DUSP domain profile. 610 702 IPR006615 GO:0004843
Phco7g00828 1179 Pfam Ubiquitin carboxyl-terminal hydrolase 204 543 IPR001394 GO:0004843|GO:0016579
Phco7g00828 1179 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 159 545 - -
Phco7g00828 1179 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 440 458 IPR018200 GO:0004843|GO:0006511
Phco7g00828 1179 Gene3D - 1068 1139 - -
Phco7g00828 1179 FunFam ubiquitin carboxyl-terminal hydrolase 48 190 546 - -
Phco7g00828 1179 CDD Ubl_USP48 1069 1170 IPR044743 GO:0004197|GO:0004843|GO:0016579
Phco7g00828 1179 ProSiteProfiles DUSP domain profile. 845 965 IPR006615 GO:0004843
Phco7g00828 1179 CDD Peptidase_C19L 204 543 IPR033841 GO:0004843
Phco7g00828 1179 FunFam Ubiquitin carboxyl-terminal hydrolase 26 601 699 - -
Phco7g00828 1179 ProSiteProfiles DUSP domain profile. 717 824 IPR006615 GO:0004843
Phco7g00828 1179 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 203 546 IPR028889 -
Phco7g00828 1179 SUPERFAMILY DUSP-like 617 702 IPR035927 -
Phco7g00828 1179 Gene3D - 841 961 IPR035927 -
Phco7g00828 1179 Gene3D Cysteine proteinases 186 546 - -
Phco7g00828 1179 SUPERFAMILY Ubiquitin-like 1070 1137 IPR029071 -
Phco7g00828 1179 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 204 219 IPR018200 GO:0004843|GO:0006511
Phco7g00828 1179 ProSiteProfiles Ubiquitin domain profile. 1070 1136 IPR000626 GO:0005515
Phco7g00828 1179 SUPERFAMILY Cysteine proteinases 202 547 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00828 Phco-Chr7 6518838 6527419 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00828 7 6518838 6527419 Phco7g00828 7 6518838 6527419 ECH
Phco2g00670 2 6721598 6733676 Phco7g00828 7 6518838 6527419 PCT