Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00670 ATGACTAGACCAACAACTCGAAATAAAAATAAAAGGCAAAGACAGGGGGATGACGATGACACTTCTGAAATATGGAGGAAAATTAACAAAACAGGTGCATTGACTGAAGCTGATATAAGTCAACTGTATAGGATTTGGAAGCCTGTCTGTTCAGGTTGTCGTCTTAATACTAAAGACAACCCAAATTGCTTCTGTGCATTGGTTCCACCTCCAAATGGTACCCGGAAATCTGGCTTATGGCAGAAGATGTCTGACTTTCTTGAAAGTCTTGGCCCTGATCCAACAACAGATCTTCGTGTTTCTGATTCTTCACCTGCAGGTCTGACAAATCTTGGTGCAACATGCTATGCCAACAGTATACTACAGTGCTTGTACATGAATAAATCTTTCCGACAAGGCATATTTTCTGTAGAACAGGATGTTTTACAGCAGCAACCAGTGTTAGATCAACTGACTCGGCTTTTTGTAAGATTGCATGCTAGTAAAAAGGCTTTCATAGATTCTTCCCCATTTGTTAAAACACTGGAGTTAGACAATGGAGTTCAACAGGACAGCCATGAGTTTCTAACATTGCTTTTGTCATTACTTGAGCATTGTTTGAGCCATTCCAAAATTGCTATGGCAAGAACAATTGTTCAAGATCTTTTCCGAGGGACCGTGTCTCATGTGATGACGTGTTCAAAATGTGGAAGAGAATCTGAAGCTTCTTCCAAAATGGAAGACTTCTATGGGTTAGAATTGAATATCAAGGGGCTAAAAGATTTAGATGAGAGCCTAGATGATTACCTTGCAATTGAAGAGCTTCATGGAGATAATCAATATTTTTGTGGATCATGTAAAACAAGAGTTGATGCTACTCGCAGCATCAAGCTGTGTACATTACCTGATGTACTTAATTTTCAACTTAAACGTTATGTCTTCCTTCCACAGAATACAATGAAGAAGAAAATTACTTCTGCATTTTCATTTCCTGCGGAACTTGATATGCGCTGTAGATTGTCTGAGCCGTCTGAGTTTGAATTGATATATGAATTATCAGCTGTACTGATTCACAAAGGCACTGATGTCAATAGTGGTCATTACATTGCCCTTATCAAGGATGAAAACACTGGGCAATGGTGGGAATTTGATGATGAGCAGGTTACTAACTTGAGTTGTTGTCCATTTGGAGAAGGAGCTTCATCTTTTACTTCTAAATCTGTTAAGATGGATGCACTTCATTCTAATTGCTCTGAAGCAATGCTAGCTGACTGTAATGGTTTAGATGCCCCTCATTCACAATCTTCACTTGTGGAGACATTTTCATCTGGTGATGCATACATGTTAATGTATCTTAAGCATAGTAAAAATGTTGGTGAAAATGGGGGCATGGTTTATGGTGCTAACTTTAAAGCAGAGGGCAGTGCAGTTACTGCACAAGAGAGTGCTTGTGTCCCTTCTCATCTTTGTGAAGAGATTCAAAATTTTAATGCCTCATATCTTGATTCTTGCAACCAGTACAAACGTAGGAAAATGTTAGAACTGAGTTGTATCAATGAGAGGAGACAGGAAGTTCGATCTATTTTAGCTGAAGCTCCTACCAAACCACAAGAGCAACAGTATTTTTGGATCTGTAGTGACTGGCTTCGACAGTGGGCTGACACCATTATTCCAACTGCCCTTGACAATACATCTATCCAATGTTCGCATGGGAAAATTCCAGTGTCTAAGGTTACCTCAATGAAGCGATTATCTTCTAAAGCATGGGATAAATTATTGACTAAGTATGGTGGGGGACCAACTCTTTCTCATGATGACTGCTGTTGGGATTGTATCATCGAAGGGGCACAGAATGTGGTGTCAGCTGACACCTATCGGGATCAAAGAGAATCGTTGAAGCAATTTGCACGGGCTATTCTTGATGGAAATTATGAAGATGGAATGTACTATGTGTCTAGACCATGGCTGCAGCAATGGTTGAAAAGAAAAGTTGTTGATGCTCCATCTGAAGCTGATGCTGGACCAACAACATCCATTAGTTGTCCACATGGACAACTTATGCCTGAGCAAGCTGTTGGTGCCAAGAGGTTGCTTGTTCCTGAGGGTTTCTGGCTTTTCTTGTATAAAGATGCCATTTCTGTAAAACCTGATGATCCTCTAGGTTGCCCTGCTTTTCCTGTAGACTCAAGTGAATGTTCCCAATGCCGTGATGAAATATCTAAAGAGGCTTGCTTTGAGGACTCTATGAGATTAGTGAAACAAATGCAACGACAAAATCATGAGAAATTATTTGCTGGTAAAAGTATGCCACTTTCTCTGCATGGCAAGTATTTCTTAGTTCCCTCATCGTGGATTTCAAAATGGAGAAATTACATTAATTTGGCTGTCAAGAATTCAGATAAACCTGAAACTTTAGATGGGGTAATTGATTCACTGATGTGTGAAAAGCATTCATGTCTGGTAGAGAGGCCTCCTGAACTGATTTATAGACGCGGTGCTATAATCTCAAGAGAATCTTCTGTAGGTGGCTTAACCATCATATACGAGGATGATTGGAAATGCTTCTGTAAAGAATGGAGTGGTACTGAGACCAAAGGAATATCTGCAAGAATTGAGAATGTTAATGATTTAGAAAATGCTTTGAATGGATCCTGCAAAGAGATGCCCATATGTGAGGATCAGCTTGATACTTGGGATAAAGTGAATAATGAAAGCGTAAATGGAGTGAATGGACAACTTGTGATTAAGACTTGTCCTGAGGTTTGTGAAAGTTGCATTGGAGAAAAGGAGAGCTTTGAGTTAGTGCAAAAACTAAACTATTGCGATAAGGACATTAGTGTAATTCTTGTCCATGGAACGGAGGTCCCCAAATCTGTCTTGGATGCTGCAAAGGGCTTTGTTGAAACAGAGAGGAGGGTTTCTAAACGTTCTCGAAAGACTCAAAATGGGAGTTCAATTAGCCTAAAAGTTTCTGCTTCAACATCAATTTACCGGCTGAAAATGATGATATGGGAATCCTTTGGGGTTGTCAAAGAAAACCAGATACTACAAAAAGGCGATAGAAGAATTGATGTTGATAACGAATATACTAAGCTTGTAGATGTTAATATATTAGCTGGAGATCATATTATTGTGAGGGACTCTCAGATCCATGAAAATCGAGATATTGCAGATGAGCTTTGTGACGAGGTAATGGAAACGCAGCAAACTGAGGCAGGGTTTCGTGGAACACTCTTGACATCAAATTTTTCTTCTCAGGATCGAATGTCGTTGTTTATGTTCTTGCAAGAACTTGACGGTGTAGATGTTGACAAACACTTTCAGAAGCGAAGAAGGTATGGTTGTTGA 3327 0.3965 MTRPTTRNKNKRQRQGDDDDTSEIWRKINKTGALTEADISQLYRIWKPVCSGCRLNTKDNPNCFCALVPPPNGTRKSGLWQKMSDFLESLGPDPTTDLRVSDSSPAGLTNLGATCYANSILQCLYMNKSFRQGIFSVEQDVLQQQPVLDQLTRLFVRLHASKKAFIDSSPFVKTLELDNGVQQDSHEFLTLLLSLLEHCLSHSKIAMARTIVQDLFRGTVSHVMTCSKCGRESEASSKMEDFYGLELNIKGLKDLDESLDDYLAIEELHGDNQYFCGSCKTRVDATRSIKLCTLPDVLNFQLKRYVFLPQNTMKKKITSAFSFPAELDMRCRLSEPSEFELIYELSAVLIHKGTDVNSGHYIALIKDENTGQWWEFDDEQVTNLSCCPFGEGASSFTSKSVKMDALHSNCSEAMLADCNGLDAPHSQSSLVETFSSGDAYMLMYLKHSKNVGENGGMVYGANFKAEGSAVTAQESACVPSHLCEEIQNFNASYLDSCNQYKRRKMLELSCINERRQEVRSILAEAPTKPQEQQYFWICSDWLRQWADTIIPTALDNTSIQCSHGKIPVSKVTSMKRLSSKAWDKLLTKYGGGPTLSHDDCCWDCIIEGAQNVVSADTYRDQRESLKQFARAILDGNYEDGMYYVSRPWLQQWLKRKVVDAPSEADAGPTTSISCPHGQLMPEQAVGAKRLLVPEGFWLFLYKDAISVKPDDPLGCPAFPVDSSECSQCRDEISKEACFEDSMRLVKQMQRQNHEKLFAGKSMPLSLHGKYFLVPSSWISKWRNYINLAVKNSDKPETLDGVIDSLMCEKHSCLVERPPELIYRRGAIISRESSVGGLTIIYEDDWKCFCKEWSGTETKGISARIENVNDLENALNGSCKEMPICEDQLDTWDKVNNESVNGVNGQLVIKTCPEVCESCIGEKESFELVQKLNYCDKDISVILVHGTEVPKSVLDAAKGFVETERRVSKRSRKTQNGSSISLKVSASTSIYRLKMMIWESFGVVKENQILQKGDRRIDVDNEYTKLVDVNILAGDHIIVRDSQIHENRDIADELCDEVMETQQTEAGFRGTLLTSNFSSQDRMSLFMFLQELDGVDVDKHFQKRRRYGC 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00670 1108 Gene3D - 739 861 IPR035927 -
Phco2g00670 1108 Gene3D - 501 599 IPR035927 -
Phco2g00670 1108 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 72 447 - -
Phco2g00670 1108 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 343 361 IPR018200 GO:0004843|GO:0006511
Phco2g00670 1108 SUPERFAMILY DUSP-like 513 600 IPR035927 -
Phco2g00670 1108 MobiDBLite consensus disorder prediction 1 22 - -
Phco2g00670 1108 ProSiteProfiles DUSP domain profile. 616 723 IPR006615 GO:0004843
Phco2g00670 1108 FunFam ubiquitin carboxyl-terminal hydrolase 48 93 447 - -
Phco2g00670 1108 CDD Peptidase_C19L 107 444 IPR033841 GO:0004843
Phco2g00670 1108 ProSiteProfiles DUSP domain profile. 744 864 IPR006615 GO:0004843
Phco2g00670 1108 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 107 122 IPR018200 GO:0004843|GO:0006511
Phco2g00670 1108 Gene3D Cysteine proteinases 94 447 - -
Phco2g00670 1108 Pfam Ubiquitin carboxyl-terminal hydrolase 107 444 IPR001394 GO:0004843|GO:0016579
Phco2g00670 1108 SMART dusp 527 598 IPR006615 GO:0004843
Phco2g00670 1108 SUPERFAMILY Cysteine proteinases 105 444 IPR038765 -
Phco2g00670 1108 CDD Ubl_USP48 968 1074 IPR044743 GO:0004197|GO:0004843|GO:0016579
Phco2g00670 1108 SUPERFAMILY Ubiquitin-like 974 1040 IPR029071 -
Phco2g00670 1108 Gene3D - 970 1041 - -
Phco2g00670 1108 ProSiteProfiles DUSP domain profile. 509 601 IPR006615 GO:0004843
Phco2g00670 1108 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 106 447 IPR028889 -
Phco2g00670 1108 FunFam Ubiquitin carboxyl-terminal hydrolase 26 500 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00670 Phco-Chr2 6721598 6733676 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00670 2 6721598 6733676 Phco7g00828 7 6518838 6527419 PCT