Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00757 ATGTCTCAAGTCTTCAGCTTTTCAGGAAATGATGATTTTTGTCCTGGGGGTCGTATATATCCTAACCCCAAGGAACCATGTCTCTTTTTGTCTCTTGGCCGTTCAGTTGATTACTTTCCTCTTCAGAAGAGATCTCGCGTCAGTGTTTCATTTGATATCAATCGAGAATGGTTTGATGAGCCGAAGCAGAAGACATCTATTGAATCTTTGCCAGATGAATGCCTCTTTGAGATCCTTAGAAGGTTGCCTGCTGGCCAAGATAAGAGCGTCTGTGCTTCTGTATCCAAGCGCTGGCTTATGCTTCTAAGCAGTATTTGTAAGAATGAAATCTGCATCAATGGAAGTACCGGAGATTATAATGTGGGTGGTGATGATGATCAGGGATTTAGCAACGAAGGATATCTATCCCGAAGCTTGGAGGGAAAGAAGGCAACAGATATTAGACTTGCTGCCATTGCTGTTGGAACAGCCTCTCGAGGAGGGCTGGGGAAGCTTACTATTCGTGGATGCAATTCAGGTCGTGGGGTGACTAACGTAGGTCTCAAGGCCATTGCTCATGGATGCCCTTCTCTCAAGGTTTTCTCTGTGTTTGATGTTGCTACTATTGATGATGAAGGCCTAATTGAGATTGCTAGCGGGTGTCATAAGTTAGAGAAGCTTGACCTTTGCAAGTGTCCCAATATTTCTGACAAGACTTTAATTGCAGTCTCGAAGAAGTGTTCAAATCTGGCTGAGTTGTCAATTGAGTCATGTCCCAACATTGGTAACATAGGTCTACAAGCTATTGGGAAGTTGTGTCCCAATCTAAGGTCTATATCGATCAAGGGTTGCTCTGGAGTTGGTGATCAGGGAGTTTGTGGCCTTTTGTCTTCAACATCTTATGTTCTATCAAAGGTGAAGCTTGAGTCGTTGATGGTGTCTGATCTCTCTCTAGCAACGATTGGGCATTATGGCTTTCAAGTTACCGATCTTGTCCTAAGTTGCCTCCCAAATGTCAGCGAGAAAGGGTTCTGGGTTATGGGTAATAGCCGTGGACTGCAGAAACTGAATTCAATAACAATCGAAGGCTGCCAAGGATTGACAGACACAGGGATCGAAGCTATTGGAAAGGGTTGTCCAAATGTGAAAAACTTCCAGCTTCGTAAGTGTGCATTTCTGTCAGATAAGGGGTTGGTTTCATTTACCAGGTCTGCTCTATCAATTGAGAGCCTACAATTGCAGGAATGCCACAGCATTACCCAAATTGGGCTTTTTGGCGTCTTTTTTCACTGTGCTGCCAAACTGAAGGTTCTTACTCTGATTAGCTGCTATGGGATCAAAGATCTGAACGCTGATTTGCCAGCAATGTCTCCTTGTGAATCATTTTGGTCTTTAACAATCCGTGACTGCCCTGGATTTGGCGATGCTAATCTTGCTTTACTTGGAAAACTGTGTCCTCAGCTTAGGCATGTTGAATTGAGTGGACTTCAGAGAGTAACAGACGCAGGGTTTCTTCCACTGCTGGAGTGTTCTGAGACTGGTCTGACAACAGTTAATCTAAGGGGATGTATAAATGTGACGGACAAAGTAGTTTTGCCTATTGTGAATTCACATGGATGGACTCTTCAAGTGCTATGCCTTGAAGGTTGTAAAAGAGTGACCGATGCTAGCATGATTGCAATTGCAGGCAATTGTCCAATGCTGTCTGATCTTGATGTTTCCAAGTGTGCAATCACTGATACCGGTATTGCAGCTCTTGCACGCGGAAATCAGATCAGCCTGGAGATACTTTCTTTGGCAGGTTGTATATCGGTTTCAGACAAGAGCATGCCTGCATTGAAAAAACTGGGTCAATCCCTTGCAGGATTGAATATCAAGCGTTGCAGTGAAATCAGCAGCCGAGGTGTCAGCAAGCTTCAGGAACATCTCTGGACTTGTGACATCCTCTACTGA 1932 0.442 MSQVFSFSGNDDFCPGGRIYPNPKEPCLFLSLGRSVDYFPLQKRSRVSVSFDINREWFDEPKQKTSIESLPDECLFEILRRLPAGQDKSVCASVSKRWLMLLSSICKNEICINGSTGDYNVGGDDDQGFSNEGYLSRSLEGKKATDIRLAAIAVGTASRGGLGKLTIRGCNSGRGVTNVGLKAIAHGCPSLKVFSVFDVATIDDEGLIEIASGCHKLEKLDLCKCPNISDKTLIAVSKKCSNLAELSIESCPNIGNIGLQAIGKLCPNLRSISIKGCSGVGDQGVCGLLSSTSYVLSKVKLESLMVSDLSLATIGHYGFQVTDLVLSCLPNVSEKGFWVMGNSRGLQKLNSITIEGCQGLTDTGIEAIGKGCPNVKNFQLRKCAFLSDKGLVSFTRSALSIESLQLQECHSITQIGLFGVFFHCAAKLKVLTLISCYGIKDLNADLPAMSPCESFWSLTIRDCPGFGDANLALLGKLCPQLRHVELSGLQRVTDAGFLPLLECSETGLTTVNLRGCINVTDKVVLPIVNSHGWTLQVLCLEGCKRVTDASMIAIAGNCPMLSDLDVSKCAITDTGIAALARGNQISLEILSLAGCISVSDKSMPALKKLGQSLAGLNIKRCSEISSRGVSKLQEHLWTCDILY 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00757 643 Pfam Leucine Rich repeat 557 580 IPR001611 GO:0005515
Phco7g00757 643 Pfam Leucine Rich repeat 239 262 IPR001611 GO:0005515
Phco7g00757 643 Gene3D Ribonuclease Inhibitor 527 642 IPR032675 -
Phco7g00757 643 Gene3D Ribonuclease Inhibitor 447 526 IPR032675 -
Phco7g00757 643 FunFam EIN3-binding F-box protein 1 253 443 - -
Phco7g00757 643 SMART fbox_2 70 111 IPR001810 GO:0005515
Phco7g00757 643 SUPERFAMILY RNI-like 165 416 - -
Phco7g00757 643 Gene3D Ribonuclease Inhibitor 137 251 IPR032675 -
Phco7g00757 643 PANTHER UNCHARACTERIZED 457 632 - -
Phco7g00757 643 FunFam EIN3-binding F-box protein 1 60 109 - -
Phco7g00757 643 SUPERFAMILY F-box domain 61 104 IPR036047 GO:0005515
Phco7g00757 643 FunFam EIN3-binding F-box protein 1 504 641 - -
Phco7g00757 643 Gene3D Ribonuclease Inhibitor 253 446 IPR032675 -
Phco7g00757 643 Gene3D - 60 108 - -
Phco7g00757 643 FunFam EIN3-binding F-box protein 1 134 252 - -
Phco7g00757 643 SUPERFAMILY RNI-like 345 578 - -
Phco7g00757 643 Pfam F-box domain 68 106 IPR001810 GO:0005515
Phco7g00757 643 SMART LRR_CC_2 214 239 IPR006553 -
Phco7g00757 643 SMART LRR_CC_2 398 423 IPR006553 -
Phco7g00757 643 SMART LRR_CC_2 505 530 IPR006553 -
Phco7g00757 643 SMART LRR_CC_2 188 213 IPR006553 -
Phco7g00757 643 SMART LRR_CC_2 610 635 IPR006553 -
Phco7g00757 643 SMART LRR_CC_2 452 477 IPR006553 -
Phco7g00757 643 SMART LRR_CC_2 372 397 IPR006553 -
Phco7g00757 643 SMART LRR_CC_2 346 371 IPR006553 -
Phco7g00757 643 SMART LRR_CC_2 478 503 IPR006553 -
Phco7g00757 643 SMART LRR_CC_2 584 609 IPR006553 -
Phco7g00757 643 SMART LRR_CC_2 240 265 IPR006553 -
Phco7g00757 643 SMART LRR_CC_2 532 557 IPR006553 -
Phco7g00757 643 SMART LRR_CC_2 558 582 IPR006553 -
Phco7g00757 643 SMART LRR_CC_2 266 291 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00757 Phco-Chr7 5871131 5873716 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00757 7 5871131 5873716 Phco7g00757 7 5871131 5873716 ECH
Phco2g00594 2 5777270 5780303 Phco7g00757 7 5871131 5873716 PCT