Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00594 ATGAGCCACAGTGGAAACCGTTCAGTGTACGGGAATCTCTTTCCCTTTCCAATAAAAGCCTCCCTTTTCCCAAACACTTACCCTTCATTTTTTCTTCAAACCCCTTTTTTTCTCATCTCTTCTGTCTCTTTTTTTGCCCTATCTCATAGGGTTCCCGCGATCTTCACCTTCGATTACTCGCTCTCTCATGCGTTCTTGCCCTCATCAATCACACACCGCCATCGCAGTTCTTCTTGTTGCTGTTTTCTTTTTCGCTCTCCTTTTTGCTCTCGTTCGAGGGTTCTTTCGTGTGGAACGCTGTGGGGTTCTCCACCCGGCTTTTATTCACCCGTGCCCATGTCTAAAGTTCTTGGCTTTTCCGGAGGTGATGACTTTTGCCCTGGGGGATCAATATACGCCAACCCCAAGGAAGCAAGTTTCTTCCTGCCCCTTGGCCCACAAGTTGATGTATACTTTCCTCCTAGGAAGAGATCACGCGTCAACGCTCCATTCCTGTTCGATGGAGAATGGTTTGAGCAAAAGCAGGAAACCTCTATTGAAGCCTTGCCAGATGAGTGTCTCTTTGAGATCTTTAGAAGGTTACCCGCTGGCGAGGACAGGAGTGCATGTGCTTGCGTTTCCAAGCGCTGGCTTATGCTTCTAAGCAGTATTTGCAAAGATGAAATCTGTGTCATCAAGAATTCCAGCGCAGAAAACATTAAAAAGGATGGTGATGATGTAGAATTTGGAGGTGAGGGATACCTCTCTCGGAACTTGGAAGGAAAGAAGGCCACAGATGTTAGACTGGCTGCCATAGCTGTTGGGACTGCATCTCGCGGAGGGTTGGGGAAGCTTTCCATCCGTGGAACCAACATGTGTCGCGGAGTGACTAGTGTTGGTCTCAAGGCAGTTGCTCATGGATGCCCTTCTTTGAAGTCTCTTTCTCTATGGAACGTTTCTACTGTTGGTGATGAGGGCCTAATCGAGATCGCTAATGGTTGTCACCAGCTAGAAAAGCTCGACCTTTGCAAGTGCCCTGCAATTACTGATAAGGCTTTGGTTGCAATTGCAAAGAACTGCCAGAATCTGACTGAGCTGTCGCTGGAATCATGCCCTAATGTTGGTAATGAAGGTCTACGAGCTATTGGGAAGTTCTGCCCCGATCTAAGGTCCATAACCATCAAGGACTGCACAGGTGTTAGCGACCAGGGAATTGCTGGATTGTTTTCAACTTCTTTGGTACTGACAAAGGTGAAGCTCCAGGCACTGTCTGTGTCAGATCTCTCTCTAGCCGTTATTGGACATTATGGCAAGTCTGTTACTGATCTTGTCCTTAATTGCCTCCCAAATGTCAGCGAGAAGGGGTTCTGGGTAATGGGAAATGGTAGTGGGTTGCAGAAGCTGAAGTCACTCACAGTTGCATCATGCAGGGGAGTAACAGATATTGGTCTTGAAGCTGTAGGAAAGGGTTGCCCAAATCTGAAAATTGCACACCTTCACAAGTGTGCCTTTCTGTCAGACAATGGGTTGATATCGTTTGCTAAGTCTGCTTCATCACTCCAGAGCCTTCGATTGGAAGAGGGCCACAGAATCACCCAATTTGGGTTGTTTGGTGTCCTTTTTAACTGTGGTACTAAATTGAAGGCCATCTCTTTGGTGAGATGCTACGGAATCAAAGACCTGAGTTTGGTGTTGCCGACTGTATCTCCTTGTGAATCACTTAGGTCGTTGACTATCTGCAACTGCCCTGGATTTGGCAGCGCCTCCCTCTCTGTACTGGGAAAGCTGTGCCCTAAGCTTCAGCATGTTGAACTGAGTGGACTCGACGGAGTGACTGATGCTGGGCTTCTTCCACTGCTCGAGAGTTCTGAGGCTGGTTTGGTAAAAGTGAATCTCAGTGGTTGCACAAATGTCACAGACAAAGTAGTTTCATCCTTGGCCAATCTTCATGGTTGGACTCTTGAGAACCTAAACCTTGATGGTTGTAAAAACATCAGTGATGCTAGCTTGATGGCAATTGCTGAAAACTGTGCATTGCTATGCGATCTTGATGTCTCCAAGTGCTCAATCACTGATGCTGGGATAGCAGCCCTGGCACATGCCCAACAGATTAATCTGCAAATTCTCTCTTTGTCAGGTTGCGCTTTGGTCTCCGACAGGAGCTTGCCCGCCCTGAGAAAAGTGGGCAGGACCCTTTTGGGACTGAACATCCAGCACTGCAATGCAATTAACAGCAGCACGGTTGACATGCTTGTAGAGCTTCTCTGGAGGTGTGACATCCTCTCATAA 2268 0.4753 MSHSGNRSVYGNLFPFPIKASLFPNTYPSFFLQTPFFLISSVSFFALSHRVPAIFTFDYSLSHAFLPSSITHRHRSSSCCCFLFRSPFCSRSRVLSCGTLWGSPPGFYSPVPMSKVLGFSGGDDFCPGGSIYANPKEASFFLPLGPQVDVYFPPRKRSRVNAPFLFDGEWFEQKQETSIEALPDECLFEIFRRLPAGEDRSACACVSKRWLMLLSSICKDEICVIKNSSAENIKKDGDDVEFGGEGYLSRNLEGKKATDVRLAAIAVGTASRGGLGKLSIRGTNMCRGVTSVGLKAVAHGCPSLKSLSLWNVSTVGDEGLIEIANGCHQLEKLDLCKCPAITDKALVAIAKNCQNLTELSLESCPNVGNEGLRAIGKFCPDLRSITIKDCTGVSDQGIAGLFSTSLVLTKVKLQALSVSDLSLAVIGHYGKSVTDLVLNCLPNVSEKGFWVMGNGSGLQKLKSLTVASCRGVTDIGLEAVGKGCPNLKIAHLHKCAFLSDNGLISFAKSASSLQSLRLEEGHRITQFGLFGVLFNCGTKLKAISLVRCYGIKDLSLVLPTVSPCESLRSLTICNCPGFGSASLSVLGKLCPKLQHVELSGLDGVTDAGLLPLLESSEAGLVKVNLSGCTNVTDKVVSSLANLHGWTLENLNLDGCKNISDASLMAIAENCALLCDLDVSKCSITDAGIAALAHAQQINLQILSLSGCALVSDRSLPALRKVGRTLLGLNIQHCNAINSSTVDMLVELLWRCDILS 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00594 755 Pfam Leucine Rich repeat 352 375 IPR001611 GO:0005515
Phco2g00594 755 Pfam Leucine Rich repeat 676 692 IPR001611 GO:0005515
Phco2g00594 755 Pfam Leucine Rich repeat 590 612 IPR001611 GO:0005515
Phco2g00594 755 SMART LRR_CC_2 353 378 IPR006553 -
Phco2g00594 755 SMART LRR_CC_2 564 589 IPR006553 -
Phco2g00594 755 SMART LRR_CC_2 484 509 IPR006553 -
Phco2g00594 755 SMART LRR_CC_2 379 404 IPR006553 -
Phco2g00594 755 SMART LRR_CC_2 617 642 IPR006553 -
Phco2g00594 755 SMART LRR_CC_2 327 352 IPR006553 -
Phco2g00594 755 SMART LRR_CC_2 458 483 IPR006553 -
Phco2g00594 755 SMART LRR_CC_2 696 721 IPR006553 -
Phco2g00594 755 SMART LRR_CC_2 644 669 IPR006553 -
Phco2g00594 755 SMART LRR_CC_2 670 694 IPR006553 -
Phco2g00594 755 SMART LRR_CC_2 301 326 IPR006553 -
Phco2g00594 755 SMART LRR_CC_2 537 562 IPR006553 -
Phco2g00594 755 SMART LRR_CC_2 590 615 IPR006553 -
Phco2g00594 755 Pfam F-box domain 182 219 IPR001810 GO:0005515
Phco2g00594 755 Gene3D Ribonuclease Inhibitor 556 755 IPR032675 -
Phco2g00594 755 SUPERFAMILY RNI-like 421 751 - -
Phco2g00594 755 Gene3D Ribonuclease Inhibitor 275 353 IPR032675 -
Phco2g00594 755 CDD F-box_AtTIR1-like 179 216 - -
Phco2g00594 755 FunFam EIN3-binding F-box protein 1 172 221 - -
Phco2g00594 755 FunFam EIN3-binding F-box protein 1 366 555 - -
Phco2g00594 755 SUPERFAMILY RNI-like 286 405 - -
Phco2g00594 755 PANTHER UNCHARACTERIZED 646 738 - -
Phco2g00594 755 Gene3D - 172 222 - -
Phco2g00594 755 FunFam EIN3-binding F-box protein 1 247 365 - -
Phco2g00594 755 SUPERFAMILY F-box domain 172 216 IPR036047 GO:0005515
Phco2g00594 755 FunFam EIN3-binding F-box protein 1 558 755 - -
Phco2g00594 755 Gene3D Ribonuclease Inhibitor 354 555 IPR032675 -
Phco2g00594 755 SMART fbox_2 182 223 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00594 Phco-Chr2 5777270 5780303 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00594 2 5777270 5780303 Phco2g00594 2 5777270 5780303 ECH
Phco2g00594 2 5777270 5780303 Phco7g00757 7 5871131 5873716 PCT