Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00732 ATGGGAAAACCCACAGGGAAGAAGAAGGGTATCGATGCTACTCCGGGTGCTGCAAATTCACACGCCAAATCTGGCAAGTCCTCCAAAGCGTTCGATGAAGACACGGCAATGTTCATTAACATGTCACAAGAGTTCAGGGAAGAAGGTAACAAGTTGTTTCAGAAGAAGGACCACGAGGGCGCTATGCTCAAGTACGAGAAGGCGCTAAAGCTGCTTCCGAAGAACCACATAGATGTCGCACACCTTCACACTAACATGGCCACGTGTTACATGCAATTGGGTCTAGGGGAATACCCTCGAGCCATTCACGAATGCAATTTGGCGCTGGAAGTGTCTCCAAAGTACAGCAAAGCTCTTCTGAAAAGAGCCACATGCTATCGTGAGCTTAATCGCCTTGATTTGGCGATGAGGGATGTCAATCTTGTTTTGAGCATGGAGCCAAATAATCTCACAGCGTTGGAATCTCTCGAGAGTCTCACGAAGTCAAGGGAAGAAAAGGGGGTCTCTGTTGATGATAAAAGGATGGCTTTTGATACCACCGTTTATCACTCTCCTTCTCCTTCGCAAAAACTGAAGAAAAAGAGAGGTAAAAAAATTGAGGACAAGGTGATTGCGGAGGAAAAGGTGGGTGTTATTGTTGAGGATAAAAAGGTGGTTTCTAAAACAATCGGGCAAGAAAGCAAGGTGGTTTCAAAAGCAATTGAGCACGAAAAAAAGGTGGATTCAAAAGCAATTGAGCACGAAAAAAAGGTGGTGGAAGTCGAACCTGTGGAGGAAGAAAAACCAGTCACGAACACAAGGAGCGTCAAGTTGGTGTTTGGAGAAGATATAAGGTGGGCTCACTTACCCGTGAATTGTAGTGCGAAGTTGGTAAGGGATATAGCTAGGGACCGGTTTCCGGGTTTGAAGGGAGTTCTTGTCAAGTATAAGGATAAAGAAGGTGATTTGGTTACTATCACTACTACAGATGAACTGAGGTTAGCTGAAAAGTCTGCTCCTGAGAAGACATCGTTTAGGATTTATATTACCGAGGTCAGTCCAGATCAAGAACCTTCTTATGAAGGAACAACAACCAACGGGGATGAGGTGCAAAGGGATGGTGGAAAAAGAAATGATGGTGTTGAGAATACGGGTATGGAAGGAGGCAGAGATGAAGATGCGGCAAAAAGGATACTTGCGGTGGAGGACTGGCTTCTCCAGTTTGCAAGGCTGTTCAAGAACCATGTAGGGTTTGAGTCAGATTCTTATCTAGATACTCACGAGTTTGCAATGAAGCTGTACGGAGAAGCGATGGAGGATATGGTAGCAAGCACTGAGGCTCAAGAACTTTTTGGAATTGCTGCTGATAAATTTCAAGAGATGGCTGCCTTGGCACTGTTTAATTGGGGGAGTGTTCAAATGTCCAGGGCAAGGAACCAAGGTTCATTTTCGGAGGATGGGACCAGAGAATCTTCCTTGGAACATATAAAAGCTGCGTATGAGTTGGCACGAAGGGAGTACGAGAAAGCAGAAATGAGATATGAAGAAGCCTTGAAAATCAAACCTGACTTCTACGATGGATATCTTGCTCTTGGGCATCAGCAGTTTGAGCAAGCAAGGCTGTGCTGGTGTTATGCATTGGCATGCAAGGGCTCAGATGCTGGCTTTTCTGATGAGGTTCTACAACTTTATAACAAGGCAGAGGATAGTATGGAGAAAGGCATCTTGATGTGGGAGGAGGTTGAGGAGCAGCGTTTGAATGGAATATCCAAATCAGATAAGTATAGAGAACAGTTAGAGAAAATGGGGTTGGATGGTCTTGTCAAAGATATTTCTGATGATGAAGCTTCAAAGCAAGCTGCAAAGATGAGGTCTCAGATACACCTTCTATGGGGAACCTTGTTGTATGAACGTTCTGTTGTGGAATATAAGCTTGGCCTTCCCACATGGGAGGAGTGTTTGGAGGTTGCAGTTGAAAAGTTTGAACTAGCTGGAACTTCTGGAACAGACATTGCTTTCATTGTAAAGAATCACTGCTCAAATGAAACAGCACTTGAAGGGTTCAAAATTGATGAGATAGTACAGGCATGGAATGAGATGTACGATGCTCAGGGGTGGCAGTTTGGTGATCCATCATTTCGACTTGAACCATTGTTTCGTCGGCGTGTTCCTAAACTCCATTCCATCTTGGAGCAGTTTTAA 2181 0.4452 MGKPTGKKKGIDATPGAANSHAKSGKSSKAFDEDTAMFINMSQEFREEGNKLFQKKDHEGAMLKYEKALKLLPKNHIDVAHLHTNMATCYMQLGLGEYPRAIHECNLALEVSPKYSKALLKRATCYRELNRLDLAMRDVNLVLSMEPNNLTALESLESLTKSREEKGVSVDDKRMAFDTTVYHSPSPSQKLKKKRGKKIEDKVIAEEKVGVIVEDKKVVSKTIGQESKVVSKAIEHEKKVDSKAIEHEKKVVEVEPVEEEKPVTNTRSVKLVFGEDIRWAHLPVNCSAKLVRDIARDRFPGLKGVLVKYKDKEGDLVTITTTDELRLAEKSAPEKTSFRIYITEVSPDQEPSYEGTTTNGDEVQRDGGKRNDGVENTGMEGGRDEDAAKRILAVEDWLLQFARLFKNHVGFESDSYLDTHEFAMKLYGEAMEDMVASTEAQELFGIAADKFQEMAALALFNWGSVQMSRARNQGSFSEDGTRESSLEHIKAAYELARREYEKAEMRYEEALKIKPDFYDGYLALGHQQFEQARLCWCYALACKGSDAGFSDEVLQLYNKAEDSMEKGILMWEEVEEQRLNGISKSDKYREQLEKMGLDGLVKDISDDEASKQAAKMRSQIHLLWGTLLYERSVVEYKLGLPTWEECLEVAVEKFELAGTSGTDIAFIVKNHCSNETALEGFKIDEIVQAWNEMYDAQGWQFGDPSFRLEPLFRRRVPKLHSILEQF 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00732 726 CDD PB1 269 342 - -
Phco7g00732 726 Pfam PB1 domain 266 343 IPR000270 GO:0005515
Phco7g00732 726 SUPERFAMILY TPR-like 42 534 IPR011990 GO:0005515
Phco7g00732 726 Coils Coil 486 513 - -
Phco7g00732 726 MobiDBLite consensus disorder prediction 1 29 - -
Phco7g00732 726 SMART PB1_new 266 345 IPR000270 GO:0005515
Phco7g00732 726 ProSiteProfiles TPR repeat profile. 116 149 IPR019734 GO:0005515
Phco7g00732 726 Gene3D - 252 345 - -
Phco7g00732 726 Gene3D Tetratricopeptide repeat domain 34 178 IPR011990 GO:0005515
Phco7g00732 726 PANTHER PROTEIN CLMP1 1 724 IPR044517 -
Phco7g00732 726 MobiDBLite consensus disorder prediction 363 383 - -
Phco7g00732 726 ProSiteProfiles PB1 domain profile. 266 345 IPR000270 GO:0005515
Phco7g00732 726 SMART tpr_5 80 115 IPR019734 GO:0005515
Phco7g00732 726 SMART tpr_5 42 75 IPR019734 GO:0005515
Phco7g00732 726 SMART tpr_5 484 517 IPR019734 GO:0005515
Phco7g00732 726 SMART tpr_5 116 149 IPR019734 GO:0005515
Phco7g00732 726 ProSiteProfiles TPR repeat profile. 42 75 IPR019734 GO:0005515
Phco7g00732 726 SUPERFAMILY CAD & PB1 domains 265 353 - -
Phco7g00732 726 MobiDBLite consensus disorder prediction 348 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00732 Phco-Chr7 5657503 5659767 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00572 2 5455750 5458092 Phco7g00732 7 5657503 5659767 PCT