Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00572 ATGGGGAAGCCGGCGGGTAAAAAGAAAGATCTGGAGATTCCCGCTCCCGCCACCAAGGCCAACGGTCACCACCCGTCTAAATCATGGGAGGAAAAACGCGGGGCGGCGGTGGCGGCGTCGTCGGCGTCGTCGAAGACGTTGGACGAGGACACGGCGATGTTCATAAACATGTCGCAGGAGCTTCGAGAGGAAGGGAACAGGTTGTTTCACAGGAAGGACAACGAGGGAGCGATGTTGAAGTACGAAAAGGCCCTCAAGCTTCTGCCGCGGAACCACATCGACGTGGCGCACCTCCACACCAGCATGGCCATGTGCTACATGCAGCTGGGGCTGGGCGAGTACCCGCGCGCCATCAGCGAGTGCAACATGGCGCTGCAGGTGTCGCCGCGCTACACGAAGGCGCTGCTGAAGCGGGCCAAGTGCTACGAGGCGCTGAACCGCGTGGACCTGGCGATGCGCGACGTGCGCGTGGTGCTGAATTTGGAGCCCAATAACTCGACGGCGCTGGAGGTTTTGGATAGCTTGAGGGAGACGATGGAGGAGAAGGGGATTGTGATTGACGAGACGGAGATAGCCCTCGCGGCGCTGCAGCAGCACCCGGAGCCACCGTCGTCGCGGCTGAGGAAGGTGGTAAGGGAGAAGATCAAGAAGAATAAGAAGGAAATCAAGGGGGAGGATGAGGGAAAAGCGAACAAGATTATCGTTGAAGAGAAGGTTAAGGTTGATAATGTTAGAAAAAAGGAGAAAGAGAAATTGGCGAAAGTAGAGAAGGAGAAATTGGGGAAAGTAGAGAAGGAGAAATTGGAGAAAGTAGAGAAGGGGAAATTGGGGAAGGAAGAGAAAGGGAAATTGGGAAGGGAAGAGAAAGGGAAATTGGGGAAAGAAGAAAAAGGTGGTGTTACTAGGACTGTGAAGTTGATATATGGAGAGGATATTAGATGGGCACAATTGCCTGTGAATTGTGGAATGAGGTTGGTGAGGGATGTGATAAGGGATAAGTTTCCGGGGTTGAAGGGTGTTCTTGTGAAGTATAAGGATAGGGAGGGTGATTTGGTTACTATAACTAATACTTCTGAATTGAGGCTGGCTGAGACTTGTCATGTTCTTGGGTCGATTCGGCTTTATGTGACGAAGGTTGAGCCGGAAGAGGAGCCATTTTATGATGATGGGGTTGCGGCGGAAAGTGGGAAAGTGGTTGAGAATGGGAATGGGGGTGTGGGGAAGGGGAAGGGGGGAAGTAGTACTGTGGAGGATTGGCTTGTGCAGTTTGCTAGGTTGTTTAAGAATCATGTTGGGTTTGATTCAGATGCGTATTTGGATATTCATGGGATTGGGATGAAGTTGTATTCGGAGGCCATGGAGGATTCAGTGACAAGCGAGGCTGCTCAGGAGCTGTTTGAGATTGCTGGGGATAGGTTTCAGGAGATGGCGGCTTTGGCTTTGTTCAATTGGGGGAGTGTGCATATGTCAAGGGCTAGGAAGAGGGTGAGTTTTCCGGAGGATGGATCAAGGGATTCTTCGTTTGAGTGTGTTCAAACAGCGTATGAATGGGCTCAGAAGGAGTATATGAAAGCAGAGAAGAGATTTGGAGAAGCTGTGAAGATCAAACCAGATTTTTATGAAGGGCTTCTTGCTTTGGGGCATCAGCAATTTGAGCAAGCAAGGCTGTGCTGGTGTTTATTGACTGCGAACGAGAAGGATTTAGAAGTCAGACATTCGGATGAGGTTCTGCAGCTCTATAACAAGGCTGAGGACAACATGGAGAAAGGCATGATGATGTGGGAGGAGTTGGAGGAGCGGCGATTGAATGGACTGTCCAAATCGGATAAGTATAAAGAGCAGCTAGAGAAAATGGGTTTGCATGGTATTTTCAGGGATGTTTCTTCTGATGAAGCTGATGAACAGGCTGCAAGGATGAGGTTGCAAATATATCTTTTATGGGGCACTTTGTTGTATGAGCGTTCTGTTGTGGAGTATAAGCTAGGCCTGCCAACATGGGAAGAATGTGTAGAGGTTGCAGTTGAAAAATTTGAACTTGCTGGAGCTTCTACAACTGATATTGGGGTCATGATAAAGAACCATTGTTCTAATGAAACGGCAATGGAAGGGTTCAAAATTGATGAGATAGTGCAAGCTTGGAATGAGATGTATGATGGGTGGCAGTTTGATGTCCCATCGTTTCGACTTGAGCCGTTGTTCCGTCGGCGTGTTCCAAAACTCCATTACATCCTGGAGCAATTTTGA 2244 0.4938 MGKPAGKKKDLEIPAPATKANGHHPSKSWEEKRGAAVAASSASSKTLDEDTAMFINMSQELREEGNRLFHRKDNEGAMLKYEKALKLLPRNHIDVAHLHTSMAMCYMQLGLGEYPRAISECNMALQVSPRYTKALLKRAKCYEALNRVDLAMRDVRVVLNLEPNNSTALEVLDSLRETMEEKGIVIDETEIALAALQQHPEPPSSRLRKVVREKIKKNKKEIKGEDEGKANKIIVEEKVKVDNVRKKEKEKLAKVEKEKLGKVEKEKLEKVEKGKLGKEEKGKLGREEKGKLGKEEKGGVTRTVKLIYGEDIRWAQLPVNCGMRLVRDVIRDKFPGLKGVLVKYKDREGDLVTITNTSELRLAETCHVLGSIRLYVTKVEPEEEPFYDDGVAAESGKVVENGNGGVGKGKGGSSTVEDWLVQFARLFKNHVGFDSDAYLDIHGIGMKLYSEAMEDSVTSEAAQELFEIAGDRFQEMAALALFNWGSVHMSRARKRVSFPEDGSRDSSFECVQTAYEWAQKEYMKAEKRFGEAVKIKPDFYEGLLALGHQQFEQARLCWCLLTANEKDLEVRHSDEVLQLYNKAEDNMEKGMMMWEELEERRLNGLSKSDKYKEQLEKMGLHGIFRDVSSDEADEQAARMRLQIYLLWGTLLYERSVVEYKLGLPTWEECVEVAVEKFELAGASTTDIGVMIKNHCSNETAMEGFKIDEIVQAWNEMYDGWQFDVPSFRLEPLFRRRVPKLHYILEQF 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00572 747 SMART PB1_new 301 379 IPR000270 GO:0005515
Phco2g00572 747 ProSiteProfiles TPR repeat profile. 58 91 IPR019734 GO:0005515
Phco2g00572 747 PANTHER PROTEIN CLMP1 1 745 IPR044517 -
Phco2g00572 747 Pfam PB1 domain 301 377 IPR000270 GO:0005515
Phco2g00572 747 SUPERFAMILY CAD & PB1 domains 301 387 - -
Phco2g00572 747 ProSiteProfiles TPR repeat profile. 132 165 IPR019734 GO:0005515
Phco2g00572 747 MobiDBLite consensus disorder prediction 1 44 - -
Phco2g00572 747 Gene3D - 294 378 - -
Phco2g00572 747 ProSiteProfiles PB1 domain profile. 301 379 IPR000270 GO:0005515
Phco2g00572 747 Gene3D Tetratricopeptide repeat domain 55 183 IPR011990 GO:0005515
Phco2g00572 747 SUPERFAMILY TPR-like 52 177 IPR011990 GO:0005515
Phco2g00572 747 CDD PB1 303 376 - -
Phco2g00572 747 SMART tpr_5 96 131 IPR019734 GO:0005515
Phco2g00572 747 SMART tpr_5 132 165 IPR019734 GO:0005515
Phco2g00572 747 SMART tpr_5 506 539 IPR019734 GO:0005515
Phco2g00572 747 SMART tpr_5 58 91 IPR019734 GO:0005515
Phco2g00572 747 Coils Coil 238 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00572 Phco-Chr2 5455750 5458092 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00572 2 5455750 5458092 Phco7g00732 7 5657503 5659767 PCT