Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00713 ATGACTAGCAAATTGCAATACAGCCAAGTTATAGCTGATAGCACACATAGAACAAGCCCAACTACAAAAACCCATCTCCTCTTCCTTCTCCTCCCCCCATTTGGTACCACAACTCTATCACTCACAACATTTTCACTAACTCTTTCCAAAAACAATTCTTTTCTCTTCCCTAACATGGCCAGATCACAACAGCGATACCGAGGTGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGACACCCCATATTGAAAACTAGGATATGGCTAGGAACTTTTGAAACTGCTGAGGATGCAGCTAGAGCCTATGATGAAGCGGCAAGGCTAATGTGTGGCACAAGGGCAAGAACAAACTTCCCTTACAACCCAAATGCATCTCAGTCATCATCTTCGAAGCTTCTCTCAGCAACTTTAACTGCAAAACTGCATAGGTGCTACATGGCTTCTTTGCAAATGACAAGGCCATCACTACCAGAGCCTCAGAGAATGGCTTCACCAAATGTCATCACCTCCACAAGTAACTTCTCCATAAAGAGTAACGAAACTAAAACAATGTTGCCACAGAAGAGACAAAAGGAGGAGCAAGAAGTAGAGGAGAATTGGGTTTTGAAGAAGGTTAAGTTGGAAAGGACTCAACAGTTCAAGCCTCTTGAAGAGGACCACATTGAGCAAATGATAGAGGAGTTGCTGCATTATGGCACTATTGAGCTGTGCTCTGTGATTCCCCACCACAGGCTCTTTTAA 750 0.4413 MTSKLQYSQVIADSTHRTSPTTKTHLLFLLLPPFGTTTLSLTTFSLTLSKNNSFLFPNMARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQMTRPSLPEPQRMASPNVITSTSNFSIKSNETKTMLPQKRQKEEQEVEENWVLKKVKLERTQQFKPLEEDHIEQMIEELLHYGTIELCSVIPHHRLF 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00713 249 Pfam AP2 domain 65 114 IPR001471 GO:0003700|GO:0006355
Phco7g00713 249 SUPERFAMILY DNA-binding domain 65 124 IPR016177 GO:0003677
Phco7g00713 249 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 53 195 - -
Phco7g00713 249 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
Phco7g00713 249 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
Phco7g00713 249 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Phco7g00713 249 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Phco7g00713 249 CDD AP2 64 124 IPR001471 GO:0003700|GO:0006355
Phco7g00713 249 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
Phco7g00713 249 FunFam Ethylene-responsive transcription factor 2 64 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00713 Phco-Chr7 5483610 5484641 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco7g00713 AP2 9.8e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00713 7 5483610 5484641 Phco7g00713 7 5483610 5484641 ECH
Phco2g00547 2 5235930 5236917 Phco7g00713 7 5483610 5484641 PCT