Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00547 ATGGCCAGACCACAACAGCGTTACCGAGGTGTCCGACAAAGGCATTGGGGTTCTTGGGTCTCCGAAATTCGCCACCCCATATTGAAGACCAGGATATGGCTTGGTACATTTGAAACAGCTGAGGATGCAGCTAGAGCCTATGATGAAGCAGCTAGGCTAATGTGTGGTGCCAGGGCAAGGACAAACTTCCCTTTCAACCCCAATGTGTCTCACACATCATCTTCTAGTTCAAAGCTTCTCTCAGCAACTTTGACTGCCAAACTGCACAGGTGCTACATGGCTTCTTTGCAAATGACAAGACAGGCTTTGGCATCATCTGAGTCTCAGAGAACACCTTCAGTGTCCAATGCCACTTCCACATCCCAACCAAGCAGCTTCAGCGTGAAGAGTGACCAAACTCATGAAGTGTTGCCACACAAGAGAGCAGAGGAGGGTCAAGACTCAGAGGCCAACAGCGGTGTTAAAATGGTCAGAGCTCTTGAAAGTGTTCCCCTGCAGTTCAAGCCTCTTGAGGAAGATCACATAGAGCAAATGATTGAGGAGCTTCTTGATTATGGCTCTGTTGAGCTTTGTTCTGTCTTTTCACCCCAGACCCTTTAA 600 0.4833 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGARARTNFPFNPNVSHTSSSSSKLLSATLTAKLHRCYMASLQMTRQALASSESQRTPSVSNATSTSQPSSFSVKSDQTHEVLPHKRAEEGQDSEANSGVKMVRALESVPLQFKPLEEDHIEQMIEELLDYGSVELCSVFSPQTL 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00547 199 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Phco2g00547 199 MobiDBLite consensus disorder prediction 103 151 - -
Phco2g00547 199 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 140 - -
Phco2g00547 199 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Phco2g00547 199 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Phco2g00547 199 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Phco2g00547 199 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Phco2g00547 199 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Phco2g00547 199 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Phco2g00547 199 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Phco2g00547 199 MobiDBLite consensus disorder prediction 103 132 - -
Phco2g00547 199 MobiDBLite consensus disorder prediction 133 148 - -
Phco2g00547 199 FunFam Ethylene-responsive transcription factor 2 6 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00547 Phco-Chr2 5235930 5236917 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco2g00547 AP2 6.4e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00547 2 5235930 5236917 Phco7g00713 7 5483610 5484641 PCT