Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00691 ATGCCCAACGAAGAATCAAATCTCATAAAAAAAAAGTGCATTCGCGAGGTAGAGAGCGCAGTGGAAGAAGAAGAAGAGGAGGAAGAGGAAGAAGAAGAAGAGGAGGAAGGAGTTGAAGTGAGAGATAAAAGAATGGAGGACGATAAAATAGTTGGATATGTTACAGCGTACCTGAAGAAGAAAGGTTTCACGCAAACCGAGAAGATTTTCCAGGAAGAGTTTCAGCACAACAAAACCACCAATTCATCTTCCAGTAATTCCCTTCTCGAACCCGACATTGCCAACCACCTCCTCGCCTTCTCTCAATTGGAGAGTGGTCCCGCTAGGTTCCACGACGGCTACAGCAAACTGCGAACATGGACTTATTCTTCACTGGATTTGTACAAGCACGAGTTGCTTCGCGTGCTTTATCCCGTGTTTATCCACTGTTTTATGGACCTTGTGGCGAAAGGACACGTTCAGGAAGCTCGGAATTTCTTCAATACTTTCCGTGAAGATCACGAAATGATGCACTTGCGTGACCTTCAGAAGTTGGAAGGAGTTCTTTCTCCTACCCATCTGCAGGAAATGGAATTCGCTCACTCTCTTAGACAGAGCAAATTCAACATAAAGATATGTGAGTATTCCTATGAGCTTCTGTTGCAACATCTACACAGTACGCAATCCACCACTATACTTGGTATTATAAATGAGCATATTAACTTTCAAGTTTCCCCTGGACAACCTAGCTTAATTTCTGATGATCCGGAAGCTGTTACCCTTACTGGAAGCAGCCAGGAAGCAGCAAACCGGATAAATCAAAAAGAAATTCATTGGGGGTTACTTGAAGACTCTCTTGAAGAACGGCTGGAAAAGGCAGGGGCCTTGCTTTCAGACTCTGAAAAGGGTGAAGGGGAAGCAAAAGAGGGGGAGAATGACGAGACTAAGAAAAGATCATCCGAAGGGGGAAAGCAAGGTGGTGGTTCAGTCAAAAAAGTAAAAAAGGACAAGGGTGGTAATGCAACAGGAAAGAGTGCAAAACCTGAAGCTAACACTGTACCTGCAGCTCCTCGAGTTAAGCCTGAACTTCCCTTACCCATAATCCCAACTGACGTGGAACAGTCCATCCTTGAGGATTTAAGGAACCGTGTACAGCTCAGCAGTGTTGCATTGCCGTCAGTTAGCTTTTACACATTTATAAATACACATAATGGTTTAAGCTGTTCGTCAATATCCCATGACGGATCATTAATTGCTGGAGGATTTTCTGACTCGTCACTGAAGGTTTGGGATATGGCAAAGCTTGGACAACCGCCTGTCAGTTCTCTTTCACAGGGGGAAAATGACACATCACCAAATGATCAAATGTTTGGGCAAAGTGTTGGGAAAAGACAGTATACACTGTTTCAAGGTCATTCAGGACCTGTTTATGCGGCCTCTTTTAGTCCTGTGGGAGATTTTCTCCTTTCATCTTCAGCAGACTCAACTATTCGATTATGGAGCACCAAACTTAATGCCAATCTTGTTTGTTATAAGGGTCACAATTACCCTGTCTGGGATGTTCAGTTTAGTCCTGTAGGGCATTATTTTGCCAGCTCTTCACACGACAGAACTGCTAGGATTTGGTCCATGGACAGGATACAGCCCTTAAGAATAATGGCAGGGCACTTGTCTGATGTTGATTGTGTGCAATGGCATGCCAACTGCAACTACATTGCAACTGGTTCCAGTGACAAAACAGTTCGACTATGGGATGTGCAGAGTGGTGAGTGTGTCCGGGTTTTTGTTGGTCATAGGGGTATGATTTTGTCTTTGGCAATGTCTCCTGATGGTCGCTATATGGCATCTGGTGATGAAGATGGCACGATCATGATGTGGGACCTCTCTAGTGGTCGCTGCCTCACACCTTTGATTGGGCACACGTCCTGTGTCTGGTCCCTTGCATTCAGTTCTGAAGGTTCTATTCTAGCATCTGGATCTGCTGATTGCACTGTAAAATTGTGGGATGTAAATACGAGCACCAAGGTTTCAAGGGCTGAAGAAAAAAGTGGGAACGCTAACAGACTTAGATCACTGAAAACTCTGCCGACGAAATCTACCCCAGTTTACTCATTGCGGTTTTCTCGAAGGAATCTTCTTTTTGCGGCTGGGGCTCTAGCAAAGAGTGGCTAA 2151 0.4468 MPNEESNLIKKKCIREVESAVEEEEEEEEEEEEEEEGVEVRDKRMEDDKIVGYVTAYLKKKGFTQTEKIFQEEFQHNKTTNSSSSNSLLEPDIANHLLAFSQLESGPARFHDGYSKLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARNFFNTFREDHEMMHLRDLQKLEGVLSPTHLQEMEFAHSLRQSKFNIKICEYSYELLLQHLHSTQSTTILGIINEHINFQVSPGQPSLISDDPEAVTLTGSSQEAANRINQKEIHWGLLEDSLEERLEKAGALLSDSEKGEGEAKEGENDETKKRSSEGGKQGGGSVKKVKKDKGGNATGKSAKPEANTVPAAPRVKPELPLPIIPTDVEQSILEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSSISHDGSLIAGGFSDSSLKVWDMAKLGQPPVSSLSQGENDTSPNDQMFGQSVGKRQYTLFQGHSGPVYAASFSPVGDFLLSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRGMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSSEGSILASGSADCTVKLWDVNTSTKVSRAEEKSGNANRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGALAKSG 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00691 716 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 18 711 - -
Phco7g00691 716 FunFam Transcription initiation factor TFIID subunit 5 540 709 - -
Phco7g00691 716 ProSiteProfiles Trp-Asp (WD) repeats profile. 504 545 IPR001680 GO:0005515
Phco7g00691 716 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 504 538 - -
Phco7g00691 716 ProSitePatterns Trp-Asp (WD) repeats signature. 649 663 IPR019775 -
Phco7g00691 716 SUPERFAMILY WD40 repeat-like 386 711 IPR036322 GO:0005515
Phco7g00691 716 ProSitePatterns Trp-Asp (WD) repeats signature. 411 425 IPR019775 -
Phco7g00691 716 ProSiteProfiles Trp-Asp (WD) repeats profile. 588 629 IPR001680 GO:0005515
Phco7g00691 716 ProSiteProfiles Trp-Asp (WD) repeats profile. 630 671 IPR001680 GO:0005515
Phco7g00691 716 MobiDBLite consensus disorder prediction 321 335 - -
Phco7g00691 716 MobiDBLite consensus disorder prediction 20 37 - -
Phco7g00691 716 PRINTS G protein beta WD-40 repeat signature 481 495 IPR020472 -
Phco7g00691 716 PRINTS G protein beta WD-40 repeat signature 565 579 IPR020472 -
Phco7g00691 716 PRINTS G protein beta WD-40 repeat signature 649 663 IPR020472 -
Phco7g00691 716 Gene3D - 623 715 IPR015943 GO:0005515
Phco7g00691 716 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 546 583 - -
Phco7g00691 716 Pfam WD domain, G-beta repeat 624 662 IPR001680 GO:0005515
Phco7g00691 716 Pfam WD domain, G-beta repeat 582 620 IPR001680 GO:0005515
Phco7g00691 716 Pfam WD domain, G-beta repeat 501 536 IPR001680 GO:0005515
Phco7g00691 716 Pfam WD domain, G-beta repeat 394 424 IPR001680 GO:0005515
Phco7g00691 716 Pfam WD domain, G-beta repeat 459 494 IPR001680 GO:0005515
Phco7g00691 716 Pfam WD domain, G-beta repeat 541 578 IPR001680 GO:0005515
Phco7g00691 716 CDD WD40 462 711 - -
Phco7g00691 716 Coils Coil 10 43 - -
Phco7g00691 716 SMART WD40_4 385 424 IPR001680 GO:0005515
Phco7g00691 716 SMART WD40_4 497 536 IPR001680 GO:0005515
Phco7g00691 716 SMART WD40_4 455 494 IPR001680 GO:0005515
Phco7g00691 716 SMART WD40_4 623 662 IPR001680 GO:0005515
Phco7g00691 716 SMART WD40_4 581 620 IPR001680 GO:0005515
Phco7g00691 716 SMART WD40_4 539 578 IPR001680 GO:0005515
Phco7g00691 716 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 588 625 - -
Phco7g00691 716 MobiDBLite consensus disorder prediction 18 42 - -
Phco7g00691 716 Gene3D TFIID subunit TAF5, NTD2 domain 89 238 IPR037264 -
Phco7g00691 716 ProSiteProfiles Trp-Asp (WD) repeats profile. 462 494 IPR001680 GO:0005515
Phco7g00691 716 Gene3D - 542 622 IPR015943 GO:0005515
Phco7g00691 716 MobiDBLite consensus disorder prediction 288 355 - -
Phco7g00691 716 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 630 665 - -
Phco7g00691 716 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 462 494 - -
Phco7g00691 716 ProSitePatterns Trp-Asp (WD) repeats signature. 565 579 IPR019775 -
Phco7g00691 716 MobiDBLite consensus disorder prediction 288 314 - -
Phco7g00691 716 ProSitePatterns Trp-Asp (WD) repeats signature. 607 621 IPR019775 -
Phco7g00691 716 ProSiteProfiles Trp-Asp (WD) repeats profile. 546 587 IPR001680 GO:0005515
Phco7g00691 716 SUPERFAMILY Taf5 N-terminal domain-like 95 238 IPR037264 -
Phco7g00691 716 Gene3D - 299 541 IPR015943 GO:0005515
Phco7g00691 716 Pfam WD40 associated region in TFIID subunit, NTD2 domain 105 233 IPR007582 -
Phco7g00691 716 CDD TAF5_NTD2 107 239 IPR007582 -
Phco7g00691 716 ProSiteProfiles Trp-Asp (WD) repeats profile. 392 425 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00691 Phco-Chr7 5257211 5265933 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00491 2 4465237 4478217 Phco7g00691 7 5257211 5265933 PCT