Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00491 ATGGACGAAGATCAAATAGAAGGTTGTGTGAGTGGGTACCTCAAGCAGAAAGGGTTTGCGCAAAACGATGACCAACTTCAACTTTCCAACACCGATTCCTCTCTTCAACCCGACACTCTCAATCGCGCTCAATTGGAGAGAGGTTCCGCGAGATACCATGATGGGTATGGCAGACTAAGATCTTGGGCATACAGGTCACTTGAATCATACAAGCATGAGTTGCTGCGTGTGCTTTATCCAGTATTTATCCATTGCTTCATGGATCTTGTGGCAAAAGGGCATCTTCAGGAAGCTTGGAACTTTTTCAATACCTTTCGTGAAGACCATGAAATGATGCACTCACGGGACCTTCAGAAATTGGAACTAGTTCTTTCTCCTGCTCATTTGGTGGAAATGGAATTCGCTCATTCCCTGAGGCAGAGTAAGTTCAACATAAAGATATGTCGGTATTCTTATGAGCTTCTATTGCAACATCTACATAGTATGCAATCAAGCACAATAATTGGTATTATCAATGAGCATGTTAGCTTCCAAGTTACAGCTGGACAACCAAGCTCAATTTCTGATGATCCAGAAGCTGTTACCCTCAGTGGAAGCATCCAGGATGCAGCAAACAAGATAAATCAGAAAGAAATACTCTGGGGGATGTTTGAAGATTCTGTTGAAGACCACATAGATAAGGCTGGGCCCTTGCTTTCAGGCATTGAAAAGGGTGAAGGTGAGGGCAAAGAGGGAGACAACGATGAGAGTAAGAAAAGGTCAATTGATGTAGGAAAGCAAGGTAATTCAGTAAAAAAGGTAAAAAAGGAGAAGGTCAGCAGTGCAACAGGGAAAAATGCTAAACCAGAAGCTAACACTATATCTGCAGCACCTCGCATTAAACCAGAGCTACCCTTGCCCACAGTTTCAACTGATGTAGAACTGTCCATCCTAGAAGATTTAAGGAATCGTGTACAATTGAGTAGTGTTGCTCTCCCTTCAGTTAACTTCTACACATTTGTAAATACACATAATGGTTTAAGCTGTTCATCAATATCCCATGATGGATCATTGCTTGTTGGAGGATTTTCTGACTCGTCGCTAAAGGTCTGGGATATGGCAAAACTTGAGCAACAATCCACCACTTATTTTTCGCAGGGAGGGAATGACACATCACAAAATGAACACATTATTGGGCAAAATAGTGGGAGAAGACAGTACACATTGTTTCAAGGTCATTCAGGTCCAGTCTATGCAGCCACTTTTAGTGAAGCCGGGGATTTTCTTCTTTCCTCTTCAGCCGACAAAACAATTCGACTATGGAGTACAAAGCTTAATGCCAATCTTGTTTGTTACAAGGGTCACAATTACCCTATCTGGGATGTTCAGTTTAGTCCTGCCGGGCATTATTTTGCCAGCTGTTCACATGACAGAACTGCCAGGATTTGGTCTATGGACAGAATAAAACCTCTAAGAATACTGGCAGGACATTTGTCAGATGTTGATTGTGTGCAGTGGCATCCTAACTGCAACTACATTGCTACTGGCTCCAGTGACAAAACAGTTCGACTGTGGGATGTGCAGAGCGGGGAATGTGTTCGGGTTTTCATTGGTCATAGAAGTATGATTTTGTCTTTGGCAATGTCCCCTGATGGTCGATATATGGCATCTGGTGATGAAGATGGCACAATCATGATGTGGGACCTCTCTAGTGGCTGTTGTGTCACACCGCTAGTCAGTCACACCTCATGTGTCTGGTCACTCGCTTTCAGTTGTGAAGGTTCTCTTCTAGCATCTGGATCTGCTGACTGCACTGTCAAATTTTGGGATGTTACTACAGGTATAAAGGTTCCAAGGAATGAAGAAAAAAGTGGGAATACTAACAGACTCAGATCATTAAAAAGCCTGCCAACCAAATCTGCTTCAGTTTACTCTCTCCAGTTTTCTCGTAGGAATCTTCTTTTTGCAGCTGGAGCTCTTGCAAAAAGTGGTTGTTAG 1977 0.4289 MDEDQIEGCVSGYLKQKGFAQNDDQLQLSNTDSSLQPDTLNRAQLERGSARYHDGYGRLRSWAYRSLESYKHELLRVLYPVFIHCFMDLVAKGHLQEAWNFFNTFREDHEMMHSRDLQKLELVLSPAHLVEMEFAHSLRQSKFNIKICRYSYELLLQHLHSMQSSTIIGIINEHVSFQVTAGQPSSISDDPEAVTLSGSIQDAANKINQKEILWGMFEDSVEDHIDKAGPLLSGIEKGEGEGKEGDNDESKKRSIDVGKQGNSVKKVKKEKVSSATGKNAKPEANTISAAPRIKPELPLPTVSTDVELSILEDLRNRVQLSSVALPSVNFYTFVNTHNGLSCSSISHDGSLLVGGFSDSSLKVWDMAKLEQQSTTYFSQGGNDTSQNEHIIGQNSGRRQYTLFQGHSGPVYAATFSEAGDFLLSSSADKTIRLWSTKLNANLVCYKGHNYPIWDVQFSPAGHYFASCSHDRTARIWSMDRIKPLRILAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQSGECVRVFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLSSGCCVTPLVSHTSCVWSLAFSCEGSLLASGSADCTVKFWDVTTGIKVPRNEEKSGNTNRLRSLKSLPTKSASVYSLQFSRRNLLFAAGALAKSGC 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00491 658 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 487 524 - -
Phco2g00491 658 Gene3D TFIID subunit TAF5, NTD2 domain 30 180 IPR037264 -
Phco2g00491 658 Pfam WD40 associated region in TFIID subunit, NTD2 domain 48 175 IPR007582 -
Phco2g00491 658 Pfam WD domain, G-beta repeat 482 519 IPR001680 GO:0005515
Phco2g00491 658 Pfam WD domain, G-beta repeat 565 603 IPR001680 GO:0005515
Phco2g00491 658 Pfam WD domain, G-beta repeat 401 435 IPR001680 GO:0005515
Phco2g00491 658 Pfam WD domain, G-beta repeat 523 561 IPR001680 GO:0005515
Phco2g00491 658 Pfam WD domain, G-beta repeat 335 365 IPR001680 GO:0005515
Phco2g00491 658 Pfam WD domain, G-beta repeat 442 477 IPR001680 GO:0005515
Phco2g00491 658 CDD TAF5_NTD2 52 181 IPR007582 -
Phco2g00491 658 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 403 435 - -
Phco2g00491 658 ProSiteProfiles Trp-Asp (WD) repeats profile. 487 528 IPR001680 GO:0005515
Phco2g00491 658 Gene3D - 239 481 IPR015943 GO:0005515
Phco2g00491 658 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 529 565 - -
Phco2g00491 658 MobiDBLite consensus disorder prediction 237 276 - -
Phco2g00491 658 SMART WD40_4 438 477 IPR001680 GO:0005515
Phco2g00491 658 SMART WD40_4 522 561 IPR001680 GO:0005515
Phco2g00491 658 SMART WD40_4 564 603 IPR001680 GO:0005515
Phco2g00491 658 SMART WD40_4 326 365 IPR001680 GO:0005515
Phco2g00491 658 SMART WD40_4 480 519 IPR001680 GO:0005515
Phco2g00491 658 SMART WD40_4 395 435 IPR001680 GO:0005515
Phco2g00491 658 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 445 479 - -
Phco2g00491 658 MobiDBLite consensus disorder prediction 230 292 - -
Phco2g00491 658 SUPERFAMILY WD40 repeat-like 326 652 IPR036322 GO:0005515
Phco2g00491 658 ProSiteProfiles Trp-Asp (WD) repeats profile. 529 570 IPR001680 GO:0005515
Phco2g00491 658 PRINTS G protein beta WD-40 repeat signature 590 604 IPR020472 -
Phco2g00491 658 PRINTS G protein beta WD-40 repeat signature 506 520 IPR020472 -
Phco2g00491 658 PRINTS G protein beta WD-40 repeat signature 422 436 IPR020472 -
Phco2g00491 658 CDD WD40 338 653 - -
Phco2g00491 658 ProSitePatterns Trp-Asp (WD) repeats signature. 352 366 IPR019775 -
Phco2g00491 658 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 571 607 - -
Phco2g00491 658 Gene3D - 562 656 IPR015943 GO:0005515
Phco2g00491 658 SUPERFAMILY Taf5 N-terminal domain-like 43 179 IPR037264 -
Phco2g00491 658 ProSitePatterns Trp-Asp (WD) repeats signature. 590 604 IPR019775 -
Phco2g00491 658 ProSiteProfiles Trp-Asp (WD) repeats profile. 571 612 IPR001680 GO:0005515
Phco2g00491 658 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 2 652 - -
Phco2g00491 658 ProSitePatterns Trp-Asp (WD) repeats signature. 548 562 IPR019775 -
Phco2g00491 658 Gene3D - 482 561 IPR015943 GO:0005515
Phco2g00491 658 ProSiteProfiles Trp-Asp (WD) repeats profile. 333 374 IPR001680 GO:0005515
Phco2g00491 658 ProSitePatterns Trp-Asp (WD) repeats signature. 506 520 IPR019775 -
Phco2g00491 658 ProSiteProfiles Trp-Asp (WD) repeats profile. 403 435 IPR001680 GO:0005515
Phco2g00491 658 ProSiteProfiles Trp-Asp (WD) repeats profile. 445 486 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00491 Phco-Chr2 4465237 4478217 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00491 2 4465237 4478217 Phco7g00691 7 5257211 5265933 PCT