Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00581 ATGGAACGTGCACGGAGGCTAGCAAATAGGGCAATTCTACAGAGGCTGGTTTCTTCCACGAAGGATCATTCCCATTCACGACGTCTGTCACGTGTTTCTGATTCCTTTGCAAGAGCTAAACAGGAGAACTTGATCGGAAACAACAGACACCATGCATGCAATGTAAGATCTCGATCCATTTCAGTAGAAGCACTCAAGCCCAGCGACACGTTCCCTCGGCGTCACAACTCTGCCACCTCAGATGAACTAATCAACATGGCCCAAACATGCGGCTTCTCTAATCTCAACTCCCTCATCGATGCCACCATTCCCTTATCCATCCGTCGGAAAGAAATGTCGTTCAACACCTTTGACGAGGGACTGACAGAGGCCGAAATGATGTTGCACATGAAGAGCTTAGAGTCGAAGAACAAATGCTTCAAGTCCTACATCGGGATGGGGTACTACGACACGCACGTGCCACCCGTGATCTTGCGGAACATCATGGAGAACCCTGCGTGGTACACTCAGTACACTCCCTACCAGGCTGAGATATCTCAGGGTCGTCTTGAGTCACTCATGAATTACCAAACCATGGTCGCAGATCTCACTGCTCTTCCAATGTCCAACGCTTCGTTGCTCGATGAAGGCACTGCGGCTGCTGAAGCAATGTGGATGTGTAGCAACATTCACAAGGGGAAGAGGAAGACCTTTGTCATAGCCAATAATTGTCACCCTCAAACTATTGATATTTGCATGACTAGAGCAACTGGTTTCGGGATTAAGGTTGTTGCTGTGGATGTTAAGGATGTGGATTACGGATCCGGTGATGTTTGTGGAGTTCTTGTTCAGTATCCGGGGACTGAAGGTGAGATTATGGACTATGGGGAGTTTGTTAAGGAGGCTCATTCACATGCAGTTAAGGTTGTTATGGCGACTGATTTGTTGGCTCTGACTATGTTGAAGCCTCCCGGGGAATTTGGGGTGGATATTGTTGTTGGGTCTACTCAGAGATTTGGGGTTCCAATGGGTTATGGGGGTCCACATGCTGCGTTCCTGGCCACGTCACAAGAGTATAAAAGGATGATGCCTGGAAGGATCATTGGGATCAGTGTTGATTCTTGTGGAAAGTCAGCTTTGAGAATGGCCTTGCAAACTAGGGAGCAGCATATCCGCAGGGACAAGGCAACCAGCAACATTTGCACTGCTCAGGCATTGCTTGCAAACATGGCTGCTATGTATGCTGTGTATCATGGACCTGAAGGACTTCAAACCATTGCCCAAAGGGTTCATGGTCTTGCTGGGGTGTTTGCCCTGGGATTGAAGAAACTTGGAACAGAAGTTCAGGACCTTCCCTTCTTTGACACGGTCAAAATTAAGACCGCCAATGCTCAAGCAATTGCTGATGTTGCTCGCAAAAGTGAAATAAATTTGCGGGTTGTTGATGGGAACATTATCACTGTTGCCTTTGATGAAACAACTACCTTGGAGGATGTTGATAACCTTTTCAAAGTTTTTTCTAATGGCAAGCATGTATCCTTTACAGCTGCCTCTCTTGCACCAGAAGTTCAGATTGCACTTCCTTCTGGACTAATTAGGAAGAGTCCTTATCTAACGCACCCTATCTTTAACATGTACCACACTGAGCATGAAATGCTCAGGTACATTCATCGGCTACAATCGAAAGATCTTTCATTGTGCCATAGTATGATCCCACTGGGATCTTGTACAATGAAGTTGAATGCAACCACTGAAATGATGCCTGTGACATGGCCTAAGTTTGCTAACATTCACCCTTTTGCACCAATTGAACAGGCTCAAGGTTATCAGGAAATGTTCAAGAATTTGGGTAACATGTTGTGTGAAATCAGTGGGTTTGACTCCTTCTCTTTGCAACCTAATGCGGGTGCCGCTGGAGAATACGCTGGATTGATGGTTATTCGTGCATATCATTTGGCAAGGGGAGACCACCACCGCAATGTTTGCATTATACCTGTCTCAGCACATGGTACAAATCCTGCCAGTGCTGCTATGTGTGGAATGAAAATTGTATCAATCGGAACTGATGCCAAGGGAAACATCAATATTGAAGAGTTGAGGAAGGCTGCTGAAACACATAAGGACAACTTATCTACACTTATGGTAACATATCCTTCAACTCATGGTGTTTACGAAGAAGGGATTGACGAGATATGCAAGATTATTCATGATAACGGAGGACAAGTATATATGGATGGTGCTAACATGAATGCACAGGTGGGACTTACAAGCCCTGGTTGGATTGGAGCAGATGTTTGCCATCTGAATCTCCACAAGACATTTTGCATCCCTCATGGAGGAGGTGGCCCTGGCATGGGTCCTATTGGAGTAAAGAAACACTTGGCACCATTTTTACCTTCACATCCAGTGGTTCCCACTGGCGGCATTCCAGCCCCTGACAAGACACAACCAGTTGGTACCATTTCTGCAGCACCATGGGGCTCAGCTCTGATATTGCCTATCTCATACTCTTACATAGCCATGATGGGTTCCAAAGGACTCACCGAAGCGTCAAAAACAGCCATTTTGAAGGCAAACTATATGGCAAAACGACTGGAGACTCATTACCCTGTTCTTTTCCGTGGAGCGAATGGAACTGTTGCTCATGAATTCATCATTGACTTAAGAGGCTTTAAGAACTCTACTGGGATAGAAGCTGAGGATGTTGCAAAGCGGCTTATAGACTATGGCTTTCATGGACCAACAATGTCATTTCCTGTGCCTGGCACACTTATGATTGAACCCACTGAAAGTGAAAGCAAGGCTGAGTTAGACAGGTTTTGTGATGCTCTTATTTCCATTCGGCAAGAAATTGCTGAGATTGAGAATGGAAAGGCTGACATCAACAACAACGTACTAAAGGGTGCCCCTCACCCACCATCACTGCTCATGGGAGATGCATGGACCAAACCTTACTCTCGAGAATATGCAGCCTTCCCAGTTTCCTGGCTTCGTGTTTCCAAGTTCTGGCCTTCCACTGGACGTATTGATAATGTGTACGGTGACCGGAACTTGGTTTGCACCCTTCCCCAAGAATGA 3057 0.4609 MERARRLANRAILQRLVSSTKDHSHSRRLSRVSDSFARAKQENLIGNNRHHACNVRSRSISVEALKPSDTFPRRHNSATSDELINMAQTCGFSNLNSLIDATIPLSIRRKEMSFNTFDEGLTEAEMMLHMKSLESKNKCFKSYIGMGYYDTHVPPVILRNIMENPAWYTQYTPYQAEISQGRLESLMNYQTMVADLTALPMSNASLLDEGTAAAEAMWMCSNIHKGKRKTFVIANNCHPQTIDICMTRATGFGIKVVAVDVKDVDYGSGDVCGVLVQYPGTEGEIMDYGEFVKEAHSHAVKVVMATDLLALTMLKPPGEFGVDIVVGSTQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIIGISVDSCGKSALRMALQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLQTIAQRVHGLAGVFALGLKKLGTEVQDLPFFDTVKIKTANAQAIADVARKSEINLRVVDGNIITVAFDETTTLEDVDNLFKVFSNGKHVSFTAASLAPEVQIALPSGLIRKSPYLTHPIFNMYHTEHEMLRYIHRLQSKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPKFANIHPFAPIEQAQGYQEMFKNLGNMLCEISGFDSFSLQPNAGAAGEYAGLMVIRAYHLARGDHHRNVCIIPVSAHGTNPASAAMCGMKIVSIGTDAKGNINIEELRKAAETHKDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPAPDKTQPVGTISAAPWGSALILPISYSYIAMMGSKGLTEASKTAILKANYMAKRLETHYPVLFRGANGTVAHEFIIDLRGFKNSTGIEAEDVAKRLIDYGFHGPTMSFPVPGTLMIEPTESESKAELDRFCDALISIRQEIAEIENGKADINNNVLKGAPHPPSLLMGDAWTKPYSREYAAFPVSWLRVSKFWPSTGRIDNVYGDRNLVCTLPQE 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00581 1018 CDD GDC-P 123 499 IPR020581 GO:0004375|GO:0006546
Phco7g00581 1018 FunFam glycine dehydrogenase (Decarboxylating), mitochondrial 581 820 - -
Phco7g00581 1018 SUPERFAMILY PLP-dependent transferases 538 1016 IPR015424 -
Phco7g00581 1018 Gene3D Aspartate Aminotransferase, domain 1 833 968 IPR015422 GO:0003824
Phco7g00581 1018 Gene3D Aspartate Aminotransferase, domain 1 143 495 IPR015422 GO:0003824
Phco7g00581 1018 Pfam Glycine cleavage system P-protein 532 792 IPR020581 GO:0004375|GO:0006546
Phco7g00581 1018 Pfam Glycine cleavage system P-protein 74 499 IPR020581 GO:0004375|GO:0006546
Phco7g00581 1018 Coils Coil 689 709 - -
Phco7g00581 1018 SUPERFAMILY PLP-dependent transferases 74 498 IPR015424 -
Phco7g00581 1018 CDD GDC-P 542 937 IPR020581 GO:0004375|GO:0006546
Phco7g00581 1018 Hamap Glycine dehydrogenase (decarboxylating) [gcvP]. 65 1018 IPR003437 GO:0004375|GO:0006544
Phco7g00581 1018 PANTHER GLYCINE DEHYDROGENASE, DECARBOXYLATING 54 1017 IPR020581 GO:0004375|GO:0006546
Phco7g00581 1018 FunFam Glycine cleavage system P protein 407 495 - -
Phco7g00581 1018 FunFam Glycine dehydrogenase (decarboxylating), mitochondrial 830 968 - -
Phco7g00581 1018 Gene3D - 154 414 IPR015421 GO:0003824
Phco7g00581 1018 Gene3D - 581 832 IPR015421 GO:0003824
Phco7g00581 1018 FunFam Glycine dehydrogenase (decarboxylating), mitochondrial 154 414 - -
Phco7g00581 1018 NCBIfam aminomethyl-transferring glycine dehydrogenase 75 1014 IPR003437 GO:0004375|GO:0006544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00581 Phco-Chr7 4354717 4360123 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00581 7 4354717 4360123 Phco7g00581 7 4354717 4360123 ECH
Phco2g00417 2 3592101 3598007 Phco7g00581 7 4354717 4360123 PCT