Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00417 ATGGAACGTGCTCGCAGGCTTGCGAACCGCGCCATTCTGAAGCGTCTGGTTTCAGAGGCAAAGCAGCACCAGAAGAATGAATCCGTACTGCACTCTTCCACCACCCCCATGTTGTTGTACTCTTCCCCTAGGTGCATGTCCTCTGTTTCCTCCCCTGTTCTGCGAAACAGAGGATCCAAAACAGATACCCTTCTTGGAAGGAGCATGAACATCGCCACCATGTCACGCGGCGCTGTTGGTGGCTTCCTTGGTGTTGGTTCAACCCGATCCATCTCGGTTGAAGCGCTTCAAGCGAGTGACACTTTCCCCAGGCGCCATAATTCTGCCACCCCAGAGGAAAAGAGCAAGATGGCAGAGTCATGTGGCTTTGAGAGCATCGATTCTCTGGTGGATGCCACTGTGCCTAAGTCGATCCGCCTGAAGGAGATGAAGTTCGGGATATTTGACGGAGGGTTGACAGAGAGCCAGATGATTGAGCACATGAAGGAGTTGGCCTCAAAGAACAAGGTTTTTAAGTCCTACATTGGGATGGGGTACTACAACACTCATGTTCCACCGGTGATCTTGAGGAACATAATGGAGAACCCTGCTTGGTACACTCAGTACACTCCTTACCAGGCTGAGATATCTCAAGGGAGGCTTGAATCACTGCTGAATTACCAGACCATGATCACTGACCTCACTGCCTTGCCCATGTCCAATGCCTCATTGCTTGATGAGGGCACTGCTGCAGCTGAGGCAATGTCCATGTGCAATCACATCCAGAAAGGGAAGAAGAAGACCTTCATTATTGCAAGCAACTGCCACCCTCAGACCATTGATATTTGCAAGACAAGAGCTGCTGGATTTGATCTCAAGGTTGTGACAGCAGATCTTAAGGATATTGATTACAAATCTGGGGATGTGTGTGGTGTGCTTGTGCAGTACCCTGGGACTGAGGGTGAGGTGTTGGACTATGGGGAGTTCATCAAGAAGGCTCATGCTCATGAGGTGAAGGTTGTTATGGCAAGTGATCTGTTGGCACTGACAGTGTTGAAGCCTCCTGGGGAGTTGGGGGCAGATATTGTTGTTGGGTCAGCTCAGAGGTTTGGAGTTCCAATGGGCTATGGAGGTCCTCATGCAGCTTTCTTGGCCACATCACAAGAGTACAAGAGGATGATGCCAGGAAGAATCATTGGGGTCAGTGTTGATTCTTCTGGAAAGACTGCTTTGAGGATGGCAATGCAAACTAGGGAGCAGCATATCAGGAGGGACAAGGCTACCAGCAATATTTGCACTGCCCAGGCACTTCTTGCAAACATGGCTGCTATGTATGCCGTGTATCATGGACCTGAAGGCCTTAAGAGCATTGCACACCGTGTTCATGGTCTTGCTGGGGCCTTTGCTCTTGGATTAAAGAAACTTGGAACTGTGGAAGTTCAAGACCTTCCCTTCTTTGACACTGTGAAGGTTAAGACTTCCAACGCACATGCAATTGCTGATGCTGCTATCAGAAGTGAAATAAATTTGCGAGTTGTAGATGGAAACACTATCACTGTTGCTTTTGATGAAACAACCACATTAGAGGATGTTGATAAGCTTTTCAATGTCTTTGCTGGTGGAAAGCCAGTCTCCTTCACAGCTGCTTCTATTGCACCAGAAGTTCAAAGTGCAATTCCTTCTGGATTAACTAGGAATAGCCCTTATCTGACACACCCTATCTTTAACACGTACCAAACTGAGCATGAGTTGCTTAGATACTTGTATAGGCTACAATCAAAAGATCTCTCACTATGTCACAGTATGATTCCATTGGGATCTTGTACAATGAAGCTGAATGCAACGACTGAAATGATGCCTGTGACATGGCCCAGCTTTAGTGATATTCACCCTTTTGCACCAGTTGACCAGGCTGAAGGTTATCAGGAAATGTTCAACAATTTGGGTGACTTGTTGTGTACCATCACCGGGTTTGACTCCTTCTCTTTGCAACCAAATGCTGGTGCTGCTGGAGAATATGCTGGACTTATGGTTATCCGTGCATATCATCTGGCAAGAGGTGACCATCACCGCAATGTTTGCATTATACCTGTCTCAGCACATGGTACAAATCCTGCTAGCGCTGCTATGTGTGGAATGAAAATTGTCTCAGTTGGAACTGATGCAAAGGGAAACATTAATATAGAAGAGTTGAGGCAGGCTGCTGAAAAACACAAGGACAACTTATCTGCACTTATGGTAACATATCCTTCAACCCACGGTGTTTATGAGGAAGGTATTGATGAGATTTGCAAGATTATTCATGATAATGGGGGCCAAGTATACATGGATGGTGCCAACATGAATGCACAGGTGGGACTCACAAGCCCAGGTTGGATAGGAGCAGATGTTTGTCATCTCAATCTCCACAAGACATTCTGCATCCCTCATGGAGGAGGTGGCCCTGGCATGGGTCCTATTGGTGTAAAGAAACACTTGGCACCATTTTTACCTTCCCACCCTGTGATATCAACTGGTGGAATTCCTGCCCCTGACAAATCTCAACCACTTGGTACCATCTCTGCTGCACCATGGGGCTCAGCACTCATATTGCCAATCTCTTACACTTACATAGCCATGATGGGTTCTGGAGGACTCACTGATGCATCAAAGATAGCCATTTTGAATGCAAACTACATGGCCAAACGATTGGAGAACTATTACCCAGTTCTTTTCCGCGGAGTCAATGGAACAGTTGCTCATGAGTTCATTATTGACTTGAGAGGCTTTAAGAATACTGCTGGAATTGAGCCAGAAGATGTTGCAAAACGCCTCATGGACTATGGTTTTCATGCACCAACAATGTCGTGGCCTGTGCCTGGCACACTCATGATTGAGCCTACAGAGAGTGAAAGCAAGGCCGAGTTGGACAGGTTCTGTGATACTCTTATTTCAATTAGACAAGAAATTGCTGAGATAGAGAAAGGAAAGGCTGACATTAACAACAATGTCCTTAAGGGAGCTCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCATACTCAAGGGAATATGCAGCCTTCCCAGCTCCATGGCTCCGTGCTTCAAAGTTCTGGCCTACCACAGGACGTGTTGATAATGTGTATGGTGACCGCAACCTCATCTGCACCCTTCTCCCAGCATCACAGGCTGTTGAAGAAGAAGCTGCAGCCACAGCCTAG 3189 0.4707 MERARRLANRAILKRLVSEAKQHQKNESVLHSSTTPMLLYSSPRCMSSVSSPVLRNRGSKTDTLLGRSMNIATMSRGAVGGFLGVGSTRSISVEALQASDTFPRRHNSATPEEKSKMAESCGFESIDSLVDATVPKSIRLKEMKFGIFDGGLTESQMIEHMKELASKNKVFKSYIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEISQGRLESLLNYQTMITDLTALPMSNASLLDEGTAAAEAMSMCNHIQKGKKKTFIIASNCHPQTIDICKTRAAGFDLKVVTADLKDIDYKSGDVCGVLVQYPGTEGEVLDYGEFIKKAHAHEVKVVMASDLLALTVLKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKTALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKSIAHRVHGLAGAFALGLKKLGTVEVQDLPFFDTVKVKTSNAHAIADAAIRSEINLRVVDGNTITVAFDETTTLEDVDKLFNVFAGGKPVSFTAASIAPEVQSAIPSGLTRNSPYLTHPIFNTYQTEHELLRYLYRLQSKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPSFSDIHPFAPVDQAEGYQEMFNNLGDLLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHLARGDHHRNVCIIPVSAHGTNPASAAMCGMKIVSVGTDAKGNINIEELRQAAEKHKDNLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVISTGGIPAPDKSQPLGTISAAPWGSALILPISYTYIAMMGSGGLTDASKIAILNANYMAKRLENYYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDTLISIRQEIAEIEKGKADINNNVLKGAPHPPSLLMADAWTKPYSREYAAFPAPWLRASKFWPTTGRVDNVYGDRNLICTLLPASQAVEEEAAATA 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00417 1062 FunFam Glycine cleavage system P protein 438 527 - -
Phco2g00417 1062 Coils Coil 721 741 - -
Phco2g00417 1062 Gene3D - 614 864 IPR015421 GO:0003824
Phco2g00417 1062 Gene3D - 185 445 IPR015421 GO:0003824
Phco2g00417 1062 Gene3D Aspartate Aminotransferase, domain 1 174 527 IPR015422 GO:0003824
Phco2g00417 1062 Gene3D Aspartate Aminotransferase, domain 1 865 1000 IPR015422 GO:0003824
Phco2g00417 1062 CDD GDC-P 574 969 IPR020581 GO:0004375|GO:0006546
Phco2g00417 1062 FunFam Glycine dehydrogenase (decarboxylating), mitochondrial 862 1000 - -
Phco2g00417 1062 CDD GDC-P 154 531 IPR020581 GO:0004375|GO:0006546
Phco2g00417 1062 Pfam Glycine cleavage system P-protein 105 531 IPR020581 GO:0004375|GO:0006546
Phco2g00417 1062 Pfam Glycine cleavage system P-protein 549 824 IPR020581 GO:0004375|GO:0006546
Phco2g00417 1062 SUPERFAMILY PLP-dependent transferases 105 532 IPR015424 -
Phco2g00417 1062 FunFam glycine dehydrogenase (Decarboxylating), mitochondrial 613 852 - -
Phco2g00417 1062 SUPERFAMILY PLP-dependent transferases 552 1047 IPR015424 -
Phco2g00417 1062 PANTHER GLYCINE DEHYDROGENASE, DECARBOXYLATING 88 1052 IPR020581 GO:0004375|GO:0006546
Phco2g00417 1062 NCBIfam aminomethyl-transferring glycine dehydrogenase 105 1046 IPR003437 GO:0004375|GO:0006544
Phco2g00417 1062 Hamap Glycine dehydrogenase (decarboxylating) [gcvP]. 96 1053 IPR003437 GO:0004375|GO:0006544
Phco2g00417 1062 FunFam Glycine dehydrogenase (decarboxylating), mitochondrial 185 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00417 Phco-Chr2 3592101 3598007 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00417 2 3592101 3598007 Phco7g00581 7 4354717 4360123 PCT