Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00402 ATGGCAAGTGGGTTTGGGGAATCAACTGGGAGGTCACCCCCAAGCCCTTCATACTTCAACAACAATAATAATAGCAATGATGCTGGGAATTTTGAGTGCAACATTTGCTTTGAATTAGCGCAAGACCCCATAATTACTTTGTGCGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTTCACTTTCACTCACAGTCACGAGAATGCCCGGTTTGCAAGGCCCTCGTGGAAGAGGAGAAGCTGGTTCCCTTGTATGGGAGAGGAAAGACCTCCACTGATCCGAGATCAAAGTCTATTCCGGGCATGAATATCCCACATCGTCCGGCCGGTCAGAGGCCTGAAACTGCTCCTCCACCAGAAACAAATAATTTTCATCAACATGGGTTTGGATTTATGAGTGGCTTGGGAGGATTTGCACCACCGCCAATGGCAACAACGAGATTTGGGAATTTCGGATTGCCTGCAGCTTTTGGTGGTTTTATACCGTCCTTATTCAACTTTCAGTTGCATGGCTTTCATGATGGGGCCTTGTATCGGGGAGCCTCTGGTTTTCCTCATGGATTTTCTAATACATTTCATGGTGTTCATGCTCACGGTTATCCTCTTCGCACTCATCAAGGTCAACAAGACTATTATTTGAAGAAGCTGCTTCTATTTGTTGTTTTCTGTGTTCTTCTTGCTTTTATTTGGCAATAG 699 0.4521 MASGFGESTGRSPPSPSYFNNNNNSNDAGNFECNICFELAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEEEKLVPLYGRGKTSTDPRSKSIPGMNIPHRPAGQRPETAPPPETNNFHQHGFGFMSGLGGFAPPPMATTRFGNFGLPAAFGGFIPSLFNFQLHGFHDGALYRGASGFPHGFSNTFHGVHAHGYPLRTHQGQQDYYLKKLLLFVVFCVLLAFIWQ 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00402 232 MobiDBLite consensus disorder prediction 1 21 - -
Phco7g00402 232 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Phco7g00402 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 87 IPR013083 -
Phco7g00402 232 MobiDBLite consensus disorder prediction 87 118 - -
Phco7g00402 232 SMART ring_2 33 73 IPR001841 -
Phco7g00402 232 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 87 - -
Phco7g00402 232 ProSiteProfiles Zinc finger RING-type profile. 33 74 IPR001841 -
Phco7g00402 232 SUPERFAMILY RING/U-box 30 86 - -
Phco7g00402 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 20 227 IPR045103 GO:0005783|GO:0006511|GO:0061630
Phco7g00402 232 CDD RING-HC_AtRMA-like 31 75 - -
Phco7g00402 232 Pfam Zinc finger, C3HC4 type (RING finger) 33 73 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00402 Phco-Chr7 2841843 2842541 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00402 7 2841843 2842541 Phco4g01027 4 8156936 8157631 ECH
Phco7g00402 7 2841843 2842541 Phco7g00402 7 2841843 2842541 ECH