Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01027 ATGACGAGTGGTTTTGGGGAATCAACGAGACCGCCTGCTCCGAGCCCATCATGCTCGGGTAACAGTTCAAACGATGCTGGTGATTTCGAATGCAACATATGCTTCGATTTGGCGCAAGACCCCGTGATCACACTCTGTGGTCACCTATTCTGTTGGCCATGCCTTTATAGGTGGCTCCATCATCATTCCCATTCTCAGGAGTGCCCTGTTTGCAAGGCCCTTGTGCAGGAGGAGAAATTGGTGCCTCTTTATGGCAGGGGCAAAACACAGACTGATCCGAGAACTAAATCATATCCTGGAATGGAGATTCCTCACCGTCCTTCGGGGCAGAGGCCGCAAACTGCGCCGCCCCCACCTCCTCCTGAGGCCAACCCTTTTGGGAGTTATGGGTTTGGACTCATGGGAGGGTTCATTCCCATGGCAACTGCCAGATTTGGGAACTTCACACTTTCCACTGCATTTGCTGGGTTTATACCGTCACTGCTCAACATTCATTTCCATGGCTTTCAGGATGCCACTGTCTACGGGACAACTTCTGGTTATCCCTTTGGGTTTAATAGCTTTCACGGAGGGGGCACGCGCGGGTATCCGCAGGCAACTGGCGGCCAAGTGCAGCGGCAGGAGGACAATGTTTTGAAGAATCTGCTTATGTTGATTGGGTTTCTTGTCCTCCTTACAGTTATTTTTGTGTGGTAA 696 0.5129 MTSGFGESTRPPAPSPSCSGNSSNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALVQEEKLVPLYGRGKTQTDPRTKSYPGMEIPHRPSGQRPQTAPPPPPPEANPFGSYGFGLMGGFIPMATARFGNFTLSTAFAGFIPSLLNIHFHGFQDATVYGTTSGYPFGFNSFHGGGTRGYPQATGGQVQRQEDNVLKNLLMLIGFLVLLTVIFVW 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01027 231 MobiDBLite consensus disorder prediction 1 21 - -
Phco4g01027 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 20 225 IPR045103 GO:0005783|GO:0006511|GO:0061630
Phco4g01027 231 Pfam Zinc finger, C3HC4 type (RING finger) 30 71 - -
Phco4g01027 231 MobiDBLite consensus disorder prediction 84 123 - -
Phco4g01027 231 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 15 85 - -
Phco4g01027 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 94 IPR013083 -
Phco4g01027 231 SMART ring_2 31 71 IPR001841 -
Phco4g01027 231 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Phco4g01027 231 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Phco4g01027 231 SUPERFAMILY RING/U-box 27 84 - -
Phco4g01027 231 CDD RING-HC_AtRMA-like 29 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01027 Phco-Chr4 8156936 8157631 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01027 4 8156936 8157631 Phco4g01027 4 8156936 8157631 ECH
Phco7g00402 7 2841843 2842541 Phco4g01027 4 8156936 8157631 ECH