Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g03180 ATGTCCAGTCGTATGTTCGTGCAGACTGTATTGAGTTTCAAGACCCATATATTATGTAAACATGGAGCAAATACTTCCAGCAAGAGTAGTCATTTCTGTTCCTATTCAGATACCAAGAATCTCACTGAGTTAGCATTGCTTTACTGCCATAGAATAGGTGATGTTAGCCTTCTTGAGGTGGGGCAGGGGTGCAAATTCTTGCAAGTTCTTCACTTGGTAGATTGCTCAAGCATCGGTGATGATGCCATGTGTAGTATAGCTAGTGGCTGCCGGAATCTAAAGAAACTTCATATTCGTCGATGTTACAAGATTGGGAACAAGGGAATCATTGCTGTTGGCAAGCATTGTACATCTCTAACAGATCTTAGCATTCGATTCTGCGACAGGGTGGGTGATGGGGCCTTTACTGCAATAGCTGAGGGCTGTTCCCTTTATTCTCTGACTGTTAGTGGTTGTCATCGAATTGGAGATGCTGGAGAGATATCCATCGCAAGGGGCTGTCCTCAACTCTGTCATTTAGATAATCTGGGCGATGTGGCAATGGCTGAGCTGGGTGAAAACTGCACATCGCTTAAAGAAATAGTGCTCTCACACTGCCGTAAAATTACTGATGTTGGCCTGACGCTTCTTGTCAAAAGTTGCACAATGCTGGAGTTTTGTCAAATGGTTTATTGCGCTGTCAAACAAACATCATTAGTTTTTTCAGATTCTGAATCCTTGTTTCTGCCCAAAACTGAATCCCAATTCAATACCATGAGTTCCTCAACTACAGTGAGGAAGCTAGAGGTTGTGTCCCCTGTTCCTGCGGACATAGACATTGCCAACTCCGTTGAACCTGTTCACATATCCCAGATTGCCAAAGACCTCAACCTCAGTCCCAATCACTATGATCTTTACGGTAAATACAAGGCCAAGGTTTTGTTGTCAGTTCTTGATGAGCTTGAAGGATCACAAGATGGGTATTATGTTGTGGTGGGAGGCATTACTCCAACTCCTCTTGGGGAAGGGAAATCTACTACCACAGTTGGGCTCTGTCAAGCTTTAGGTGCTTTTCTTGATAAAAAGGTAGTCACCTGCGTTCGTCAACCATCACAAGGACCTACTTTTGGCATTAAAGGAGGTGCAGCTGGTGGTGGCTATAGCCAAGTTATTCCCATGGATGAATTCAATCTTCATCTAACAGGAGATATTCATGCAATAACTGCAGCAAACAATCTTCTAGCTGCTGCAATTGATACCCGGATTTTCCATGAGTCAACGCAGTCGGATAAGGCTCTTTTTAACAGACTGTGCCCTCCAAATAAAGAAGGGAAAAGGAGCTTCAGTGATGTCATGTTCAGGCGTCTTAAGAAGCTTGGCATTTCAAAGACCAATCCAGATGATCTTACACCAGAAGAAGTAAATAAATTTGCGAGGCTTGATATTGACCCAAATTCAATTACATGGAGGAGAGTAATGGACATCAATGACCGATTCTTGAGAAAAATTACTATTGGCCAGGGACCAGACGAGAAAGGAATGGTAAGAGAAACAGCATTTGATATTTCAGTTGCTAGTGAGATAATGGCTGTTTTGGCACTGACAACTTCCTTAGCTGATATGAGAGAGCGACTTGGGAAAATGGTTATTGGAAATAGCAAGAGTGGTGACCCTGTCACTGCTGATGATCTAGGTGTTGGAGGTGCCTTAACAGTTTTAATGAAGGATGCCATTCACCCTACCCTTATGCAGACCCTGGAAGGAACTCCTGTTCTTGTTCATGCAGGTCCGTTTGCAAATATTGCTCATGGGAATTCTTCTATTGTGGCTGATAAGATTGCACTGAAGTTGGTTGGACCAGGTGGATTTGTAGTTACTGAAGCTGGTTTTGGTGCTGATATTGGAGCCGAAAAGTTTATGAACATTAAGTGTCGTTATAGTGGTTTGACACCTCAATGTGCAATTATTGTGGCAACAATAAGGGCACTCAAAATGCATGGTGGAGGGCCAGCTGTTGTTGCTGGAAAACCTCTTGATCATGCATATTTGACTGAAAATGTTGCCCTGGTTGAGGCAGGTTGTGTGAATATGGCACGGCATATATCAAATACAAAATCTTACGGTGTAAATGTTGTAGTTGCTATCAACATGTTTTCAACTGACACTGAAGCTGAGCTAAATGCGGTTCGGAGTGCTGCTTTAGCCGCTGGAGCTTATGATGCTGTAATTTGTACCCATCACGCCCATGGTGGCAAAGGAGCCGTTGACCTGGGAATTGCAGTTCAAAAAGCTTGTGAGAATGTGACACAGCCATTGAAGTTCCTGTATCCTCTGGATCTGAGTATAAAAGAGAAAATAGAGGCAATAGCAAGATCATATGGAGCCAGTGGCGTTGAGTACTCTGAACAGGCTGAGAAGAAGATTGAGATGTATAGCAAGCAAGGATTTTCTGGTCTTCCAATCTGCATGGCCAAGACTCAGTATTCTTTCTCAGACAATGCTGCAGCAAAGGGAGCTCCAAGTGGGTTTGTCTTACCCATAAGGGATGTGAGAGCTAGTATAGGTGCTGGCTTTATTTATCCTTTAGTTGGAACAATGAGTACAATGCCAGGGCTTCCAACGAGGCCATGCTTCTATGACATTGATATTGATACGACAACTGGAAAAGTCACTGGTCTCTCATAA 2664 0.4332 MSSRMFVQTVLSFKTHILCKHGANTSSKSSHFCSYSDTKNLTELALLYCHRIGDVSLLEVGQGCKFLQVLHLVDCSSIGDDAMCSIASGCRNLKKLHIRRCYKIGNKGIIAVGKHCTSLTDLSIRFCDRVGDGAFTAIAEGCSLYSLTVSGCHRIGDAGEISIARGCPQLCHLDNLGDVAMAELGENCTSLKEIVLSHCRKITDVGLTLLVKSCTMLEFCQMVYCAVKQTSLVFSDSESLFLPKTESQFNTMSSSTTVRKLEVVSPVPADIDIANSVEPVHISQIAKDLNLSPNHYDLYGKYKAKVLLSVLDELEGSQDGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCVRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHESTQSDKALFNRLCPPNKEGKRSFSDVMFRRLKKLGISKTNPDDLTPEEVNKFARLDIDPNSITWRRVMDINDRFLRKITIGQGPDEKGMVRETAFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKSGDPVTADDLGVGGALTVLMKDAIHPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAIIVATIRALKMHGGGPAVVAGKPLDHAYLTENVALVEAGCVNMARHISNTKSYGVNVVVAINMFSTDTEAELNAVRSAALAAGAYDAVICTHHAHGGKGAVDLGIAVQKACENVTQPLKFLYPLDLSIKEKIEAIARSYGASGVEYSEQAEKKIEMYSKQGFSGLPICMAKTQYSFSDNAAAKGAPSGFVLPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYDIDIDTTTGKVTGLS 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g03180 887 FunFam C-1-tetrahydrofolate synthase, cytoplasmic 268 426 - -
Phco6g03180 887 Gene3D - 418 483 - -
Phco6g03180 887 ProSitePatterns Formate--tetrahydrofolate ligase signature 1. 370 380 IPR020628 GO:0005524
Phco6g03180 887 SUPERFAMILY RNI-like 29 230 - -
Phco6g03180 887 Hamap Formate--tetrahydrofolate ligase [fhs]. 267 887 IPR000559 GO:0004329|GO:0005524
Phco6g03180 887 Gene3D Ribonuclease Inhibitor 15 263 IPR032675 -
Phco6g03180 887 Pfam Formate--tetrahydrofolate ligase 269 887 IPR000559 GO:0004329|GO:0005524
Phco6g03180 887 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 270 884 IPR027417 -
Phco6g03180 887 SMART LRR_CC_2 167 187 IPR006553 -
Phco6g03180 887 SMART LRR_CC_2 38 63 IPR006553 -
Phco6g03180 887 SMART LRR_CC_2 90 115 IPR006553 -
Phco6g03180 887 SMART LRR_CC_2 188 213 IPR006553 -
Phco6g03180 887 SMART LRR_CC_2 64 89 IPR006553 -
Phco6g03180 887 SMART LRR_CC_2 142 166 IPR006553 -
Phco6g03180 887 SMART LRR_CC_2 116 141 IPR006553 -
Phco6g03180 887 FunFam C-1-tetrahydrofolate synthase, cytoplasmic isoform X2 501 773 - -
Phco6g03180 887 Pfam Leucine Rich repeat 115 137 IPR001611 GO:0005515
Phco6g03180 887 Pfam Leucine Rich repeat 187 210 IPR001611 GO:0005515
Phco6g03180 887 Pfam Leucine Rich repeat 90 112 IPR001611 GO:0005515
Phco6g03180 887 Gene3D - 522 773 IPR027417 -
Phco6g03180 887 Gene3D - 266 417 IPR027417 -
Phco6g03180 887 PANTHER UNCHARACTERIZED 112 227 - -
Phco6g03180 887 ProSitePatterns Formate--tetrahydrofolate ligase signature 2. 650 661 IPR020628 GO:0005524
Phco6g03180 887 FunFam Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like 418 483 - -
Phco6g03180 887 FunFam Putative formate--tetrahydrofolate ligase 774 862 - -
Phco6g03180 887 CDD FTHFS 282 886 IPR000559 GO:0004329|GO:0005524
Phco6g03180 887 Gene3D Formyltetrahydrofolate synthetase, domain 3 774 862 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g03180 6 52372788 52381060 Phco6g03180 6 52372788 52381060 ECH
Phco6g03180 6 52372788 52381060 Phco10g00377 10 3418284 3420704 ECH