Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g03146 ATGGCCTCTCACTCGATCCAACCAGGAACCGGAGCTGACGGGCAAGGAGAAAAGGGCCCCCCGCCGCCGATCCCAGCAACGGCCTCTCAGAATCCGCTTTCTGAGATTTCGCCATCGCCATCGCCGTCGCCGTCGTCCTCGACGGCGCCGGCGCTTGTGCTGTCGAACTCGGGGAAGCGCATCGACCAGGCGGGGAAGAAGTACGTGAAGCAGGTGACGGGGCGGCACAACGACACGGAGCTGCACCTGGCGGCACAGAGGGGTGACGTCGGCGCGGTGAGGCAGATTCTTCTCGACGTCGATTCTCAGGTTATGGGAACTCTCGGAGACGACGACGATCTCGACACCGAGATTGCGGAGGTGCGAGCTTGCCTCGTCAACGAAGAGAACGAGCTCGGTGAGACCCCTTTGTTCACTGCCGCTGAAAAGGGTCATCTCCATGTCGTGAAGGAACTTCTCAACCATTCCACCGCTCAGACTGTTTCCAAGAAGAACCGATCCGGATTTGATCCCTTGCATATTGCAGCTAGTCAAGGCCACCACCCCATTGTTCAGGTTTTGCTAGATTATGACCCGGGATTGAGCAAAACTATTGGTCCATCCAATTCAACTCCACTTATAACTGCAGCAACAAGAGGACACACGGAAGTGGTGAATGAGCTGCTGTCGAAGGATTGTAGCTTGTTGGAGATTGCTAGATCCAATGGCAAAAATGCATTGCATTTAGCAGCCCGTCAGGGTCATGTGGAGATTGTGAAAGCCTTGCTCAGTAAAGATCCACAGTTGGCTCGGAGGACTGACAGGAAAGGGCAAACTGCATTGCATATGGCTGTAAAAGGGCAGAGTTGTGACGTGGTAAAATTACTTCTTGATGCGGATGCTGCTATTGTTATGCTTCCTGACAAATTTGGTAACACAGCACTACACGTGGCAACCAGGAAAAAGCGAGTAGAGATAGTGAATGAGTTATTACATCTGCCAGACACCAATGTTAATGCATTAACCAGAGACCACAAAACAGCTCTTGACATTGCCGAAAGCCTTCCACTTTCTGAAGAGGCATCAGATATAAAGGAATGTCTTTCTCGATACGGAGCACTTAGAGCTAACGAGCTCAACCAACCTAGGGATGAACTGAGGAAAACTGTTACTCAAATCAAGAAAGATGTTCACACTCAACTCGAACAAACCAAGAGAACGAACAAAAATGTTCATAATATTTCCAAAGAGTTAAGGAAACTCCACAGGGAAGGAATCAACAATGCCACTCAGTCAGTAACAGTGGTGGCGGTGCTGTTTGCTACAGTTGCTTTTGCTGCTATATTCACTGTGCCTGGCGGTGATAACGATGATGGCTCAGCTGTGGTAGCAGCTCATGCTGCTTTTAAAATCTTCTTCATCTTTAATGCAATTGCACTTTTTACATCTTTGGCGGTTGTGGTTGTTCAAATCACCTTGGTTAGAGGTGAAACTAAGGCAGAGAAAAGGGTGGTGGAGGTAATCAACAAGCTCATGTGGCTGGCTTCTGTCTGTACTTCAGTGGCATTTATTGCTTCTTCTTACATAGTTGTGGGTAAGAAGAATAAGTGGGCTGCTATTCTGGTTACAGTAGTTGGAGGGGTGATAATATCTGGAGTTATTGGCACCATGACTTTCTATGTGGTGAGGTCTAAGAGAAGCAGATCAATGAGGAAGAAGGAGAAGCAGCTAGCTAGAAGGAGTGGATCTAACTCATGGCATCATTCTGAATTCTCCAACTCTGAGGTTGATCGGATTTATGCGATTTGA 1788 0.4843 MASHSIQPGTGADGQGEKGPPPPIPATASQNPLSEISPSPSPSPSSSTAPALVLSNSGKRIDQAGKKYVKQVTGRHNDTELHLAAQRGDVGAVRQILLDVDSQVMGTLGDDDDLDTEIAEVRACLVNEENELGETPLFTAAEKGHLHVVKELLNHSTAQTVSKKNRSGFDPLHIAASQGHHPIVQVLLDYDPGLSKTIGPSNSTPLITAATRGHTEVVNELLSKDCSLLEIARSNGKNALHLAARQGHVEIVKALLSKDPQLARRTDRKGQTALHMAVKGQSCDVVKLLLDADAAIVMLPDKFGNTALHVATRKKRVEIVNELLHLPDTNVNALTRDHKTALDIAESLPLSEEASDIKECLSRYGALRANELNQPRDELRKTVTQIKKDVHTQLEQTKRTNKNVHNISKELRKLHREGINNATQSVTVVAVLFATVAFAAIFTVPGGDNDDGSAVVAAHAAFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGKKNKWAAILVTVVGGVIISGVIGTMTFYVVRSKRSRSMRKKEKQLARRSGSNSWHHSEFSNSEVDRIYAI 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g03146 595 ProSiteProfiles Ankyrin repeat profile. 167 189 IPR002110 GO:0005515
Phco6g03146 595 ProSiteProfiles Ankyrin repeat region circular profile. 235 258 - -
Phco6g03146 595 FunFam Ankyrin repeat-containing protein ITN1 isoform A 194 393 - -
Phco6g03146 595 SUPERFAMILY Ankyrin repeat 81 349 IPR036770 -
Phco6g03146 595 ProSiteProfiles Ankyrin repeat profile. 132 164 IPR002110 GO:0005515
Phco6g03146 595 Gene3D - 55 192 IPR036770 -
Phco6g03146 595 ProSiteProfiles Ankyrin repeat profile. 235 267 IPR002110 GO:0005515
Phco6g03146 595 Gene3D - 195 393 IPR036770 -
Phco6g03146 595 ProSiteProfiles Ankyrin repeat profile. 269 301 IPR002110 GO:0005515
Phco6g03146 595 FunFam Ankyrin repeat-containing protein ITN1 51 193 - -
Phco6g03146 595 Pfam Ankyrin repeats (3 copies) 81 193 IPR002110 GO:0005515
Phco6g03146 595 Pfam Ankyrin repeats (3 copies) 267 332 IPR002110 GO:0005515
Phco6g03146 595 Pfam Ankyrin repeats (3 copies) 201 260 IPR002110 GO:0005515
Phco6g03146 595 Pfam Domain of unknown function 417 523 IPR026961 -
Phco6g03146 595 ProSiteProfiles Ankyrin repeat region circular profile. 132 156 - -
Phco6g03146 595 CDD SQR_QFR_TM 423 518 - -
Phco6g03146 595 ProSiteProfiles Ankyrin repeat region circular profile. 167 189 - -
Phco6g03146 595 MobiDBLite consensus disorder prediction 1 57 - -
Phco6g03146 595 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 49 579 - -
Phco6g03146 595 SMART ANK_2a 76 105 IPR002110 GO:0005515
Phco6g03146 595 SMART ANK_2a 235 264 IPR002110 GO:0005515
Phco6g03146 595 SMART ANK_2a 269 298 IPR002110 GO:0005515
Phco6g03146 595 SMART ANK_2a 132 161 IPR002110 GO:0005515
Phco6g03146 595 SMART ANK_2a 201 230 IPR002110 GO:0005515
Phco6g03146 595 SMART ANK_2a 303 333 IPR002110 GO:0005515
Phco6g03146 595 SMART ANK_2a 167 196 IPR002110 GO:0005515
Phco6g03146 595 ProSiteProfiles Ankyrin repeat region circular profile. 269 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g03146 Phco-Chr6 52181777 52185639 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01970 2 50421729 50424303 Phco6g03146 6 52181777 52185639 ECH
Phco6g03146 6 52181777 52185639 Phco6g03146 6 52181777 52185639 ECH