Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01970 ATGATGGAGAAACAATTGACAGGTATACGGGGTGATTCACCCCTACAATCTGCAATTCGAGCTGGAAATTTAGAATTGGTTCGGGAAATCATCTCTCAGAGTCCAGAGGGAGAATTAAAGGAGCTTCTTTCAAAGAGAAACAACTCGTGTGAAACTGCCTTATACGTTGCGGCTGAAAATGGTCATCTTGATATAGTGAAGGAATTGATTAGATACTATGATATTGGGTTGGCCGGCTTCAAAGCTCGAAATGGATTCGATGCATTCCACATCGCTGCTAAGAATGGACACTTGGAGATATTGAAGGTTCTCATGGAGTTTATTCCTGAAATTTCAATAACTGTTGATCTGTCAAACACTACTGCGCTGCATACTGCTGCAGCACAAGGACATCTTGAGGTAGTCAATTTTCTCTTGGAAAATGGTAGCAGCTTGGTAACTATTGCGAAAAGCAATGGGAAAACTGTGTTGCATTCTGCTGCAAGAAATGGTCATGTAGAGATAGTCAAGGCCCTTCTGAACAAAGAACCTGAAATTGCAGTGAGAATGGATAAGAAGGGACAGACAGTTCTCCATATGGCAGTTAAAGGACAGAATCTTGAGTTGGTGGATGATCTTGTGAAACTGAATTCATCTTTGGCTAATATGGTGGACGCCAAGGGAAACACTGCATTGCATATAGCAACCCGGAAGGGTTGTCTACTGGTTGTTCAGAAGCTACTAGATTGCAGAGAAATAGACAAAGATGTTATCAACAAATCTGGAGAAACTGCCTTAGATACTGCAGAAAAAAATGGTCGGTTGGAAATTTCCAACTTTCTGCAACACCGCGGAGCTCAAAATGCCAAGTCCATCAAGTCACCTAATACAAACACAGCCCTTGAGCCCAAACGAACATTAAATGACATAAAAAGCGGGGTTCATAACCAGCTGGAACACACTTTTAAAACACACAGACGCATGCAAGGAATAGCTAAGCGAATTAACAAAATGCACACTGAGGGGCTTAACAATGCAATCAACTCTAACACTGTTGTTGCTGTCCTAATTGCAACAGTTGCTTTTGCTGCCATATTTAATGTCCCGGGCCAGTATCCTGAGCAACAAGATAAACTCTCTCCTGTAATGTCTCCTGGGGAAGCATATATTGCTCCCGATATTGGATTCAAGATATTCATAATCTTTGATTCTACTGCCCTCTTCATATCATTGGCTGTTGTGATTGTCCAAACATCAGTGGTTGTTATTGAGAGGAAAGCAAAGAGACAAATGATGGCAGTAATAAATAAGTTGATGTGGGTATCTTGTGTGCTAATTTCTGTGGCGTTTATTGCAATGTCATTCATAATTGTTGGAGATCATAAAGAGTTGGCTATAGCAGCCACAGCTCTAGGGACAGTGATTATGGCAGCAACTTTAGGGACACTCTGTTATTGGGTGATTGTTCACCGCCTTGAGGCCTCAAGATTGCGAAGTCTTAGGACAACAATGAGCAGTAGGCAGTCAATGTCTATGTCTATGATGTCAGGATCGGAGAGTGAGTACAAGACAGTGTACGCCGTATAA 1566 0.4176 MMEKQLTGIRGDSPLQSAIRAGNLELVREIISQSPEGELKELLSKRNNSCETALYVAAENGHLDIVKELIRYYDIGLAGFKARNGFDAFHIAAKNGHLEILKVLMEFIPEISITVDLSNTTALHTAAAQGHLEVVNFLLENGSSLVTIAKSNGKTVLHSAARNGHVEIVKALLNKEPEIAVRMDKKGQTVLHMAVKGQNLELVDDLVKLNSSLANMVDAKGNTALHIATRKGCLLVVQKLLDCREIDKDVINKSGETALDTAEKNGRLEISNFLQHRGAQNAKSIKSPNTNTALEPKRTLNDIKSGVHNQLEHTFKTHRRMQGIAKRINKMHTEGLNNAINSNTVVAVLIATVAFAAIFNVPGQYPEQQDKLSPVMSPGEAYIAPDIGFKIFIIFDSTALFISLAVVIVQTSVVVIERKAKRQMMAVINKLMWVSCVLISVAFIAMSFIIVGDHKELAIAATALGTVIMAATLGTLCYWVIVHRLEASRLRSLRTTMSSRQSMSMSMMSGSESEYKTVYAV 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01970 521 ProSiteProfiles Ankyrin repeat profile. 152 184 IPR002110 GO:0005515
Phco2g01970 521 ProSiteProfiles Ankyrin repeat region circular profile. 84 106 - -
Phco2g01970 521 ProSiteProfiles Ankyrin repeat profile. 118 150 IPR002110 GO:0005515
Phco2g01970 521 ProSiteProfiles Ankyrin repeat region circular profile. 220 242 - -
Phco2g01970 521 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 10 505 - -
Phco2g01970 521 Pfam Ankyrin repeat 221 243 IPR002110 GO:0005515
Phco2g01970 521 Gene3D - 2 108 IPR036770 -
Phco2g01970 521 Gene3D - 180 281 IPR036770 -
Phco2g01970 521 Gene3D - 109 179 IPR036770 -
Phco2g01970 521 Pfam Domain of unknown function 334 449 IPR026961 -
Phco2g01970 521 ProSiteProfiles Ankyrin repeat profile. 84 106 IPR002110 GO:0005515
Phco2g01970 521 ProSiteProfiles Ankyrin repeat profile. 220 242 IPR002110 GO:0005515
Phco2g01970 521 ProSiteProfiles Ankyrin repeat region circular profile. 152 179 - -
Phco2g01970 521 Pfam Ankyrin repeats (3 copies) 152 208 IPR002110 GO:0005515
Phco2g01970 521 Pfam Ankyrin repeats (3 copies) 10 75 IPR002110 GO:0005515
Phco2g01970 521 Pfam Ankyrin repeats (3 copies) 81 145 IPR002110 GO:0005515
Phco2g01970 521 SMART ANK_2a 118 148 IPR002110 GO:0005515
Phco2g01970 521 SMART ANK_2a 49 77 IPR002110 GO:0005515
Phco2g01970 521 SMART ANK_2a 220 250 IPR002110 GO:0005515
Phco2g01970 521 SMART ANK_2a 186 215 IPR002110 GO:0005515
Phco2g01970 521 SMART ANK_2a 84 113 IPR002110 GO:0005515
Phco2g01970 521 SMART ANK_2a 10 41 IPR002110 GO:0005515
Phco2g01970 521 SMART ANK_2a 254 284 IPR002110 GO:0005515
Phco2g01970 521 SMART ANK_2a 152 181 IPR002110 GO:0005515
Phco2g01970 521 ProSiteProfiles Ankyrin repeat region circular profile. 118 145 - -
Phco2g01970 521 SUPERFAMILY Ankyrin repeat 14 279 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01970 Phco-Chr2 50421729 50424303 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01970 2 50421729 50424303 Phco6g03146 6 52181777 52185639 ECH
Phco2g01970 2 50421729 50424303 Phco2g01970 2 50421729 50424303 ECH