Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02826 ATGGCAATTCAGCAACACAATCACCAACTACAACATAATGAGAATGTCTCATCTGTCCTTGATGCCCTTTACTGTGATGAAGCAAAGTGGGAAGATGAGGACGAGAAGGAAGAAGAGGATGAAGAGAGTGATGTCACAACAAACAATGATGCATGTGGGGTGCACCACACTGCCGGAGCTTCTCTTTTCCCTCTGCTCTTGTTGGAGCAAGACTTGTTCTGGGAAGACGAGGAACTAAACTCTCTCTTTTCCAAAGAGAAGATTCAACTTGAACAAGTTTATGGCTGTAACAATCTCAACAGTGATGATAATAACAATAATGATGGTTGTGATAGTACTAATAACAATTATGTGCATTTGAACCCTTCTTTCTCTCAGCCTCGTCGTGAGGCAGTGGAATGGATGCTTAAAGTCAATGCTCACTATGGATTCTCTGCTCTAACTGCAACACTGGCCGTTACTTACCTGGATAGGTTCCTTCTAAGCTTCCATTTTCAAAGGGAGAAGCCTTGGATGATCCAGCTTGTGGCTGTCACTTGCATCTCTTTGGCTGCAAAAGTTGAAGAAACTCAAGTGCCCCTTCTCTTAGACCTTCAAGTGCAAGACACTAAGTATGTGTTTGAGGCAAAGACTATTCAGAGAATGGAGCTGCTGGTGCTGTCCACCCTCAAATGGAAGATGCATCCCGTGACCCCACTCTCGTTTCTAGATCACATTATAAGAAGGCTTGGATTGAAAACTCATCTTCACTGGGAGTTTCTCAGGCGCTGTGAGCATCTTCTTCTGTCTGTGCTTTTAGATTCGAGATTTGTTGGGTGCCTTCCCTCTGTTTTGGCCACTGCAACAATGCTGCATGTTATAGACCAGATTGAGCACAGTGGTGGGATGGAATACAAAAATCAGCTTCTGAGTGTTCTCAAAATTAGCAAGGAGAAAGTAGATGAGTGTTATAATGCTATTCTCCAACGCTCAAACGCCAATAATTATGGTCATAACAACAATATTTACAAACGCAAGTATGAGGAAATTCCAGACAGCCCAAGTGGCGTAATTGATGCTGCATTTGGCTCTGATGGTTCCAACGATTCGTGGGCAGTGGGGTCATCACTATATTCACCACCAGAGCCTCTGTTCAAGAAGAGCAGAACCCAAGGACAACAAATGAAATTGTCACCACTTAATCGGGTCATTGTCGGAATTGTTGGCACCTCTCCTTGA 1218 0.4368 MAIQQHNHQLQHNENVSSVLDALYCDEAKWEDEDEKEEEDEESDVTTNNDACGVHHTAGASLFPLLLLEQDLFWEDEELNSLFSKEKIQLEQVYGCNNLNSDDNNNNDGCDSTNNNYVHLNPSFSQPRREAVEWMLKVNAHYGFSALTATLAVTYLDRFLLSFHFQREKPWMIQLVAVTCISLAAKVEETQVPLLLDLQVQDTKYVFEAKTIQRMELLVLSTLKWKMHPVTPLSFLDHIIRRLGLKTHLHWEFLRRCEHLLLSVLLDSRFVGCLPSVLATATMLHVIDQIEHSGGMEYKNQLLSVLKISKEKVDECYNAILQRSNANNYGHNNNIYKRKYEEIPDSPSGVIDAAFGSDGSNDSWAVGSSLYSPPEPLFKKSRTQGQQMKLSPLNRVIVGIVGTSP 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02826 405 ProSitePatterns Cyclins signature. 128 159 IPR006671 -
Phco6g02826 405 Pfam Cyclin, C-terminal domain 230 340 IPR004367 -
Phco6g02826 405 FunFam D3-type cyclin 121 228 - -
Phco6g02826 405 PANTHER CYCLINS 82 328 IPR039361 -
Phco6g02826 405 MobiDBLite consensus disorder prediction 30 51 - -
Phco6g02826 405 MobiDBLite consensus disorder prediction 30 46 - -
Phco6g02826 405 SUPERFAMILY Cyclin-like 125 228 IPR036915 -
Phco6g02826 405 CDD CYCLIN_AtCycD-like_rpt1 128 225 - -
Phco6g02826 405 Gene3D - 125 228 - -
Phco6g02826 405 CDD CYCLIN_AtCycD-like_rpt2 230 320 - -
Phco6g02826 405 SMART cyclin_7 133 221 IPR013763 -
Phco6g02826 405 SMART Cyclin_C_2 230 359 IPR004367 -
Phco6g02826 405 Gene3D - 229 320 - -
Phco6g02826 405 Pfam Cyclin, N-terminal domain 114 227 IPR006671 -
Phco6g02826 405 SUPERFAMILY Cyclin-like 231 340 IPR036915 -
Phco6g02826 405 FunFam CYCLIN D32 229 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02826 Phco-Chr6 49494196 49495884 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02826 6 49494196 49495884 Phco6g02826 6 49494196 49495884 ECH
Phco7g00486 7 3549156 3550764 Phco6g02826 6 49494196 49495884 ECH
Phco2g00298 2 2409610 2411136 Phco6g02826 6 49494196 49495884 ECH
Phco4g01149 4 9456315 9457620 Phco6g02826 6 49494196 49495884 PCT