Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02556 ATGTTCAAACCGGTTCTTCTTCTTCTTCTGCTCTTCCTGGCCTCTGGATTGACCCTCTCAGTTTCAGAGTCCCAATCTATTTCCCTTCTGCCTCATGCTGCTGAGTCCTTCAATGTCAGCTATATCCAGCTGAAGAACGCGGGGAGTTGTTCTTACTTGGTGGTTATATCTACTAGTTGTTCGTCTACTAGGTATACAAAAGATCAGATCAGTATTGCTTTTGGGGATGCTTACGGAAACCAGATATATGTACCAAGACTGGATGATCCAACTTCAGGTACATTTGAGAGTTGTAGTTCAGATACATTTCAAATAAGTGGTCCTTGTGCATATCAGATATGTTATGTGTACCTATATAGACATGGATCAGATGGTTGGAAGCCTGAAAGTGTGAAAATCAATGCTTATAATGGAAGGCCTGTTACTTTCTATTACAACACATATATCCCTAGAGATACTTGGTATGGATTTGATTGGTGCAGCAGTGCTTCTTCTTCGGACCAGGTATCGAAGCAGAAATGGCTTATATTTATTGTTCTAGGATTTGTTCTATGTTTTTGGTCGAGAAGCATAACAAATAGAGTTTCAACTCTAATGAAGGATATGGCCTGTTCGGGGACGACATCAGTACCAGTACTCTCAGGAGTGTTGTCACCTTGTGATGGAGATGGAGTTGTGCTCTGGAAGGGAGTGAATGTTTCCATCCCTAAAACCATAAACCCGAAAACCTCGTCGCCGCTCTCTCCTCTTTCTTCTCCTGCTTCTGCACCTCATAGCCACACCCCCTTTCAAGCAGGAGAAAATCTCTCTCTTTCTCTCTCTCTTCATCTTTCTCCTTACGCCGCCATCACCATGCCTTCAGTCTCTCTCTCTGCCAGTGACATCACCCTCCAAGAAAACAAGAAACTTAGTGCCAAGAAAGCCAAGAACCAATCCCCAGTCATTGCGGAGAAAAATAGTCCCTCCAAACTCATTTCCAATCCTAACGCCCCCGATCCCGACCACGATGGGGTTTCGGGGAAGCTCCAGAAGAAGGCGAAGAAGCGCAAGGCTTCAGATATAGAGGTCATGGCGGCTACCAACGATGCCGACGAAGACACTGGTTCCGAGCTGGTCGAGCCTGAATCTTCTAGGGAAGACGACCACAAGAAGAAGAAAAAGAAGAAAAAGGCTAAGTCCGAGGAACAGCCTTTGGTGATGGAGGCAGAGGAAAAAGAAGAAAAGAAGGAGGATCCTAATGCGGTTTCCAAATTCAGGATATCTGAACCGTTGAAGCTAAAATTGAAGGAGAAGGGGATCGAATCGCTGTTTCCCATTCAGGCCATGACTTTTGATTTAGTTCTTGACGGTTCTGATTTGGTTGGTCGGGCTCGCACCGGTCAGGGTAAAACTCTGGCATTTGTGCTTCCCATATTGGAGTCTTTAACAAATGGTCCAGCTAAGTCTTCTAGAAAGACTGGCTATGGGAGGACTCCAAGCGTTCTTGTGCTTCTACCAACTAGAGAATTGGCTTGTCAGGTACATGCTGATTTTGAAGTTTATGGTGGGGCGATGGGATTGAGTTCTTGTTGTTTGTATGGTGGAGCTCCATATAACACTCAAGAAATTAAGCTTAGGAGAGGTGTTGATATTGTAATTGGCACACCAGGTCGTGTAAAGGATCATATCGAGAGGGGAAATATAGACCTGAGTCAACTAAAATTTCGTGTCCTTGATGAAGCAGATGAAATGTTGAGGATGGGTTTTGTTGAAGATGTTGAATTGATTCTAGGTAAGGTTGAAAATGTTAATAAAGTTCAGACTCTTCTTTTCAGCGCTACTTTGCCAGACTGGGTTAAACAAATCGCTGCACGATTTCTGAAGCCAGATAAGAAAACTGCTGACCTTGTCGGAAATACAAAAATGAAGGCTAGTACCAATGTGAGACATATTGTCCTCCCTTGTTCTGCTTCTGCCAGGTCCCAACTTATCCCAGACATTATTCGCTGTTATAGCAGTGGAGGCCGGACAATTATATTTACCGAGACAAAGGAGTCTGCTTCTCAGCTTGCTGGGTTGTTACCTGGAGCCCGAGCTCTCCATGGTGACATACAGCAAGCACAACGTGAGGTTACTTTGTCTGGCTTTAGGTCTGGGAAATTCATGACATTAGTTGCCACAAATGTGGCAGCTCGAGGTCTTGATATAAATGATGTTCAGTTAATTATCCAGTGTGAGTTCCCACGGGAGGTTGAGTCCTATATCCATCGATCTGGACGAACAGGAAGAGCAGGTAATAGTGGGGTTGCTGTTACGCTTTATGATCCAAAAAGATCTAATATATCTAAAATCGAAAGAGAGTCCGGTGTAAAATTTGAGCACATATCTGCCCCTCGGCCTGATGATATTGCCAAAGCTGTTGGTGGGGAAGCTGCTGAAATGATTACCCAAGTTTCTGATAGTGTGATTCCTGCATTCAAAGCTACTGCTGAAGAGCTTTTGAAGAGTTCTGGTTTAACAGTTGTTGAATTGCTTGCAAAGGCTCTTGCGAAGGCTGTTGGTTATACCGAAATAAAGCAAAGATCACTTCTCACTTCCATGGAAAACTATGTTACATTGCTTCTTGAAATTGGGAAACCAATCTTCACCCCTTCTTTTGCCTATGGAATCTTGAGGAGATTCTTGCCTGAAGAGAAGGTGGAGGCTGTGAAAGGTCTTTCACTCACTGCTGATGGAAATGGTGTTGTTTTTGATGTACCAGCTGAAGATTTAGATACATATCTTAGTGGTCAGGAAAATGCAGCTAATGTAAGTCTAGAGGTGTTGAAAGCCTTGCCCCGTTTGCAACAGAGAGAACAATCAAGAGGTGGCAGATTTGGTGACGGTGGTGGTCGAGGTGGTGGGAACAGGTTTGGAAGAGGTGGAGGAGGCAGGAACGGTAGATTTTCAAATGATAGGTTCTCCAATGGTGGTGGAAGAGGTGGTCGTGGCAACTGGGGTGGAAAGAGATGGTGA 2994 0.4432 MFKPVLLLLLLFLASGLTLSVSESQSISLLPHAAESFNVSYIQLKNAGSCSYLVVISTSCSSTRYTKDQISIAFGDAYGNQIYVPRLDDPTSGTFESCSSDTFQISGPCAYQICYVYLYRHGSDGWKPESVKINAYNGRPVTFYYNTYIPRDTWYGFDWCSSASSSDQVSKQKWLIFIVLGFVLCFWSRSITNRVSTLMKDMACSGTTSVPVLSGVLSPCDGDGVVLWKGVNVSIPKTINPKTSSPLSPLSSPASAPHSHTPFQAGENLSLSLSLHLSPYAAITMPSVSLSASDITLQENKKLSAKKAKNQSPVIAEKNSPSKLISNPNAPDPDHDGVSGKLQKKAKKRKASDIEVMAATNDADEDTGSELVEPESSREDDHKKKKKKKKAKSEEQPLVMEAEEKEEKKEDPNAVSKFRISEPLKLKLKEKGIESLFPIQAMTFDLVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKSSRKTGYGRTPSVLVLLPTRELACQVHADFEVYGGAMGLSSCCLYGGAPYNTQEIKLRRGVDIVIGTPGRVKDHIERGNIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVENVNKVQTLLFSATLPDWVKQIAARFLKPDKKTADLVGNTKMKASTNVRHIVLPCSASARSQLIPDIIRCYSSGGRTIIFTETKESASQLAGLLPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEFPREVESYIHRSGRTGRAGNSGVAVTLYDPKRSNISKIERESGVKFEHISAPRPDDIAKAVGGEAAEMITQVSDSVIPAFKATAEELLKSSGLTVVELLAKALAKAVGYTEIKQRSLLTSMENYVTLLLEIGKPIFTPSFAYGILRRFLPEEKVEAVKGLSLTADGNGVVFDVPAEDLDTYLSGQENAANVSLEVLKALPRLQQREQSRGGRFGDGGGRGGGNRFGRGGGGRNGRFSNDRFSNGGGRGGRGNWGGKRW 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02556 997 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 444 626 IPR014001 -
Phco6g02556 997 MobiDBLite consensus disorder prediction 242 263 - -
Phco6g02556 997 Gene3D - 865 936 - -
Phco6g02556 997 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 570 578 IPR000629 -
Phco6g02556 997 MobiDBLite consensus disorder prediction 313 327 - -
Phco6g02556 997 CDD DEADc 428 621 - -
Phco6g02556 997 CDD SF2_C_DEAD 641 767 - -
Phco6g02556 997 Pfam DEAD/DEAH box helicase 437 614 IPR011545 GO:0003676|GO:0005524
Phco6g02556 997 Pfam Helicase conserved C-terminal domain 660 758 IPR001650 -
Phco6g02556 997 Gene3D PLAT/LH2 domain 48 156 - -
Phco6g02556 997 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 770 IPR027417 -
Phco6g02556 997 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 655 797 IPR001650 -
Phco6g02556 997 SMART ultradead3 432 644 IPR014001 -
Phco6g02556 997 MobiDBLite consensus disorder prediction 303 410 - -
Phco6g02556 997 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 48 157 IPR036392 GO:0005515
Phco6g02556 997 CDD GUCT_RH7_like 854 939 - -
Phco6g02556 997 MobiDBLite consensus disorder prediction 392 410 - -
Phco6g02556 997 SMART helicmild6 681 758 IPR001650 -
Phco6g02556 997 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 374 820 - -
Phco6g02556 997 Pfam Embryo-specific protein 3, (ATS3) 42 160 IPR010417 -
Phco6g02556 997 SUPERFAMILY RNA-binding domain, RBD 851 934 IPR035979 GO:0003676
Phco6g02556 997 CDD PLAT 50 160 - -
Phco6g02556 997 Pfam GUCT (NUC152) domain 847 942 IPR012562 GO:0003723|GO:0004386|GO:0005524
Phco6g02556 997 Gene3D - 360 626 IPR027417 -
Phco6g02556 997 Gene3D - 639 864 IPR027417 -
Phco6g02556 997 FunFam DEAD-box ATP-dependent RNA helicase 7 864 936 - -
Phco6g02556 997 MobiDBLite consensus disorder prediction 945 997 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02556 Phco-Chr6 47093980 47107225 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02556 6 47093980 47107225 Phco6g02556 6 47093980 47107225 ECH
Phco5g00578 5 5460182 5461753 Phco6g02556 6 47093980 47107225 PCT