Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00578 ATGACCAAGTTTGTTCTTTTTTGGTTATGCTTTTCCTCTGCACTGAGCCTTTCAGCTTCAGAGTCCGAAGCTGTTCTTGTGAAACTTCATGCAGCTGAATCCTTCTCTGCGGGGTATATTCAGATGAAAACTGAATCAAGCTGTTCTTACTTGTTGGTTATAAGTACGAGTTGTTCATCGCCCTTGTTCACAACTGATAAGATTGGTATTGCGTTTGGAGATGCTAAAGGAAACCAGGTATATGTGCCAAGACTAGATGATCCACTGTCAAAGACATTTGAGCAATGTTCTTCAGATACATTTCAGATAGATGGTGCATGTGCATCTCCCATTTGCTTTGTGTATCTCTATAGATCAGGGGAAGAGAAAGGTTGGAAGCCTGAGAGTGTGAAAATCTTTGGCTATGACTCAGAGCCTGTTACTTTTACCTTCAACACCTCCATCCCCAATGACACATGGTATGGCTACAATGTGTGCCAGACTCCACCTTCTCCTTCTTCTGCTTTCCAACTATCACCTCAGAAATGGCTTATGAGTTTGGTTCTAGGCTTTATTCTTAGCCTTTTGCTTCTTTAA 576 0.4167 MTKFVLFWLCFSSALSLSASESEAVLVKLHAAESFSAGYIQMKTESSCSYLLVISTSCSSPLFTTDKIGIAFGDAKGNQVYVPRLDDPLSKTFEQCSSDTFQIDGACASPICFVYLYRSGEEKGWKPESVKIFGYDSEPVTFTFNTSIPNDTWYGYNVCQTPPSPSSAFQLSPQKWLMSLVLGFILSLLLL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00578 191 CDD PLAT 48 161 - -
Phco5g00578 191 Pfam Embryo-specific protein 3, (ATS3) 41 159 IPR010417 -
Phco5g00578 191 Gene3D PLAT/LH2 domain 30 179 - -
Phco5g00578 191 PANTHER PLAT DOMAIN-CONTAINING PROTEIN 7 164 - -
Phco5g00578 191 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 46 156 IPR036392 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00578 Phco-Chr5 5460182 5461753 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00578 5 5460182 5461753 Phco5g00578 5 5460182 5461753 ECH
Phco5g00578 5 5460182 5461753 Phco6g02556 6 47093980 47107225 PCT