LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco6g02525	ATGATAGAACGGTTAGCAACTGTCAACCGTGTTTTGGACGCGTGGGTTGTGTCAGCCAGAAACCAAACAGGTAACATGTTTTCCACCAACTCACAAACGACCTCGCCGGTGTCGGGAGGTTCCCGTCCGGCGCTGTCGGACGAGGAGGTGTTTCTGGCGGCGAGGCACCCCAAGAAACGCGCCGGGAGGAAGAAGTTCCGGGAGACGCGCCACCCGGTGTACCGCGGCGTCAGGCGGAGGGACTCCGGGAAGTGGGTGTGCGAGGTGCGCGAGCCCAATAAGAAGACCAGGATTTGGCTGGGGACCTTTCTCACGGCGGAGATGGCGGCGCGTGCGCACGACGTGGCGGCGCTCGCGCTTAGGGGAAGGTCGGCCTGTCTCAATTTCGCCGACTCCGCGCATCGTTTGCCGGTTCCGGCGACATTGGATCCCCGGGACATTCAGAAGGCGGCGGCACAGGCTGCAGAGGCGTTTCGGCCCGGTAATGAATCGGGAAAGGATGATGATGCGGTGGTAGAAACGGTGGCGACAGCGACGGAGCATGATGAAGAAGAAGGGATGGACTATCTGAAGAATATGGTGCTGATGTCGCCAATCCATTGCTTCGAGGGTGATGAATACGGAAGTACTGAAATGGAATTTGAGGACATGGAAGTTTCGTTGTGGAGTTATTCACTTTAA	681	0.58	MIERLATVNRVLDAWVVSARNQTGNMFSTNSQTTSPVSGGSRPALSDEEVFLAARHPKKRAGRKKFRETRHPVYRGVRRRDSGKWVCEVREPNKKTRIWLGTFLTAEMAARAHDVAALALRGRSACLNFADSAHRLPVPATLDPRDIQKAAAQAAEAFRPGNESGKDDDAVVETVATATEHDEEEGMDYLKNMVLMSPIHCFEGDEYGSTEMEFEDMEVSLWSYSL	226

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco6g02525	226	SMART	rav1_2	73	136	IPR001471	GO:0003700\|GO:0006355
	Phco6g02525	226	CDD	AP2	74	132	IPR001471	GO:0003700\|GO:0006355
	Phco6g02525	226	FunFam	Ethylene-responsive transcription factor 2	72	131	-	-
	Phco6g02525	226	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D	30	224	IPR045277	GO:0003700
	Phco6g02525	226	ProSiteProfiles	AP2/ERF domain profile.	73	130	IPR001471	GO:0003700\|GO:0006355
	Phco6g02525	226	SUPERFAMILY	DNA-binding domain	73	132	IPR016177	GO:0003677
	Phco6g02525	226	Gene3D	AP2/ERF domain	73	131	IPR036955	GO:0003700\|GO:0006355
	Phco6g02525	226	PRINTS	Ethylene responsive element binding protein signature	96	112	IPR001471	GO:0003700\|GO:0006355
	Phco6g02525	226	PRINTS	Ethylene responsive element binding protein signature	74	85	IPR001471	GO:0003700\|GO:0006355
	Phco6g02525	226	Pfam	AP2 domain	72	122	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco6g02525	Phco-Chr6	46751335	46753092	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Phco6g02525		AP2	2.8e-14	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco5g00619	5	6094654	6095328	Phco6g02525	6	46751335	46753092	ECH
	Phco6g02525	6	46751335	46753092	Phco6g02525	6	46751335	46753092	ECH
	Phco5g00619	5	6094654	6095328	Phco6g02525	6	46751335	46753092	PCT