LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco5g00619	ATGTTTGGATTCTACCATGTTTCCTCTGAGCACTCCTCTTCTTTGGATTCCTTATCGCCACCTTCGGAGACCTCTCGCGGTGTGGCATTCTCCGACGAGGAGATTCGGTTGGCCGTCAGGCATCCCAAGAAGAGGGCGGGCCGGAAGAAGTTCCGGGAGACGCGCCACCCCGTGTACCGCGGAGTGAGGAGGAGGAACTCAGACAAATGGGTGTGTGAGGTGAGGGAGCCAAACAAAAAGAGCAGGATTTGGCTAGGGACTTTTCCCACGCCAGAGATGGCGGCGCGGGCACACGATGTGGCGGCGATGGCTCTCAGGGGTCGGTATGCGTGTCTCAACTTTGCCGACTCGAGGTGGCGGCTACCAGTCCCTGCTAGTGCCAGCGCCAAAGATATACAAAAGGCAGCCGCAGAGGCTGCTGAAGCTTTCAGACCAGACCAAACTTTGGAAAACACTAACACAAGGCAAGAGTGCGTGGAGGCGGTGACGAAAACAACGATGGAACAAGGTTTATTTTATATGGAGGAAGATCAAGAAGAGCAAGAGTTGGATATGCCTGAGTTGCTGAGGAACATGGTGCTCAGGTCCCCATTACATTGCTTAGGGTATGAGTACGAAGATGCTGACCTGGGAGCTCAAGACACTGAGGTGTCACTATGGAGTTTCTCAATCTAA	675	0.5363	MFGFYHVSSEHSSSLDSLSPPSETSRGVAFSDEEIRLAVRHPKKRAGRKKFRETRHPVYRGVRRRNSDKWVCEVREPNKKSRIWLGTFPTPEMAARAHDVAAMALRGRYACLNFADSRWRLPVPASASAKDIQKAAAEAAEAFRPDQTLENTNTRQECVEAVTKTTMEQGLFYMEEDQEEQELDMPELLRNMVLRSPLHCLGYEYEDADLGAQDTEVSLWSFSI	224

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco5g00619	224	FunFam	Ethylene-responsive transcription factor 2	57	116	-	-
	Phco5g00619	224	Pfam	AP2 domain	57	107	IPR001471	GO:0003700\|GO:0006355
	Phco5g00619	224	SMART	rav1_2	58	121	IPR001471	GO:0003700\|GO:0006355
	Phco5g00619	224	PRINTS	Ethylene responsive element binding protein signature	81	97	IPR001471	GO:0003700\|GO:0006355
	Phco5g00619	224	PRINTS	Ethylene responsive element binding protein signature	59	70	IPR001471	GO:0003700\|GO:0006355
	Phco5g00619	224	CDD	AP2	59	117	IPR001471	GO:0003700\|GO:0006355
	Phco5g00619	224	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D	10	221	IPR045277	GO:0003700
	Phco5g00619	224	Gene3D	AP2/ERF domain	58	116	IPR036955	GO:0003700\|GO:0006355
	Phco5g00619	224	ProSiteProfiles	AP2/ERF domain profile.	58	115	IPR001471	GO:0003700\|GO:0006355
	Phco5g00619	224	SUPERFAMILY	DNA-binding domain	58	117	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco5g00619	Phco-Chr5	6094654	6095328	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Phco5g00619		AP2	8.4e-15	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco5g00619	5	6094654	6095328	Phco6g02525	6	46751335	46753092	ECH
	Phco5g00619	5	6094654	6095328	Phco5g00619	5	6094654	6095328	ECH
	Phco5g00619	5	6094654	6095328	Phco6g02525	6	46751335	46753092	PCT