Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02512 ATGGGCTTTCTCCGGCGAATTTTCGGCGCCAAAAAATCCTCAGACTCCAAATCCCCCAAGAAAAGATGGGCCTTCCTCAAGCCCACCGTCCGGAACAAGTCACTCCCGCCGCCACCGCCCCCCTCTGCCGTTAACACCCACTTTGATTCCTCCACTCCACTGGACGCCAACAAGCATGCCATCGCCGTCGCCGCCGCCACCGCAGCCGTCGCCGAGGCCGCTCTTGCCGCCGCACACGCCGCAGCCGAGGTTGTCAGACTCACTAGCGGCGCCGCCGCTGCCACAAGTACCAGCACCAGCACAAGACCCGCCGCGGTGGCGGCGCGTGTTAGCCAGCTGCGGTTGCCGGAGCAGACTGCCGCCGTAACGATACAATCGGCCTTCCGTGGTTACTTGGCAAGGAGGGCATTGAGAGCACTAAAAGCATTGGTGAAGCTGCAAGCATTGGTTAGGGGCCACATTGTGAGAAAGCAAAGTGCTGATATGCTGAGGCGCATGCAAACATTGGTGAAACTTCAGGCCCAGGCACGTGCAAGCCGTGCGCACTTGTCATATTATACGCCTTCTTTCAAGTCTTCCCTTTCTCACTACCCTGTCCCTGAAGAATATGAACACCCACCTCGTGCCCTGAATACAAAATTTGATGGATCTTCTATCCTTAAGAGATGTAGTTCCAACGCCAATTGTAGGAACGTTGACTCAGAACGAGCCCGGTTTGATTCGAATTGGTTAAACCGTTGGATGGAATTAGATAACAAGTGCAGGCAAACGGGAGATGCTTCATTGAAAACTGGACGACCTGATGATGATAAAAGTGACAAGATTCTCGAAGTAGATACTTGGAGGCCACACTTCAAGCCTCACCACAGTAGCAGCTCCTTTCAGACAGCACATTATTTGAGTTCTGACTACAATAATGATAACTTAATGGCACATGAGTCTCCATCAAAACGTTCAGCAAAGGCTCTAAACCAAAGTTTCTCATCACGGGAGGTATTGCAGCTAAACTCTTTAAAGTTTCACAGAGGGAAAGAAGAAGCAACTTCAAGAACTGCCGACAATAGTCCACAATCATTTTCAGCCAATTCCAGAAATGGAAGTGGTGCAAAGAGGGGTCCCTTCACACCTACCAGGAGTGAGTGTTCATGGGGTTTCTTCAGTGGCTACTCGGGTCACCCCAATTACATGGCAAACACTGAATCTTTTCAAGCTAAGGTTAGATCACAAAGTGCACCCAGACAAAGGCTGGAATTTGACAGATACGGTTCCACTACGAGGCCTGTTCATGTGGTGGGGCCTAATTCAGACCAGGATTCAGATTTAAGAAACAAAGTTTTACCTGCTTCTAACAGTGTCAACAGAATTGGGAGTAGTAATTTAAGGTCACGTTGA 1392 0.5014 MGFLRRIFGAKKSSDSKSPKKRWAFLKPTVRNKSLPPPPPPSAVNTHFDSSTPLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSGAAAATSTSTSTRPAAVAARVSQLRLPEQTAAVTIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQSADMLRRMQTLVKLQAQARASRAHLSYYTPSFKSSLSHYPVPEEYEHPPRALNTKFDGSSILKRCSSNANCRNVDSERARFDSNWLNRWMELDNKCRQTGDASLKTGRPDDDKSDKILEVDTWRPHFKPHHSSSSFQTAHYLSSDYNNDNLMAHESPSKRSAKALNQSFSSREVLQLNSLKFHRGKEEATSRTADNSPQSFSANSRNGSGAKRGPFTPTRSECSWGFFSGYSGHPNYMANTESFQAKVRSQSAPRQRLEFDRYGSTTRPVHVVGPNSDQDSDLRNKVLPASNSVNRIGSSNLRSR 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02512 463 MobiDBLite consensus disorder prediction 342 375 - -
Phco6g02512 463 Pfam IQ calmodulin-binding motif 141 158 IPR000048 GO:0005515
Phco6g02512 463 Pfam IQ calmodulin-binding motif 120 138 IPR000048 GO:0005515
Phco6g02512 463 MobiDBLite consensus disorder prediction 1 51 - -
Phco6g02512 463 MobiDBLite consensus disorder prediction 403 463 - -
Phco6g02512 463 MobiDBLite consensus disorder prediction 350 372 - -
Phco6g02512 463 ProSiteProfiles IQ motif profile. 141 168 IPR000048 GO:0005515
Phco6g02512 463 PANTHER IQ-DOMAIN 5-RELATED 16 447 - -
Phco6g02512 463 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 162 IPR027417 -
Phco6g02512 463 ProSiteProfiles IQ motif profile. 117 145 IPR000048 GO:0005515
Phco6g02512 463 Pfam Protein of unknown function (DUF4005) 355 417 IPR025064 -
Phco6g02512 463 Gene3D - 116 169 - -
Phco6g02512 463 MobiDBLite consensus disorder prediction 428 463 - -
Phco6g02512 463 SMART iq_5 139 160 IPR000048 GO:0005515
Phco6g02512 463 SMART iq_5 116 138 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02512 Phco-Chr6 46558701 46562903 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02512 6 46558701 46562903 Phco6g02512 6 46558701 46562903 ECH
Phco5g00642 5 6414951 6419274 Phco6g02512 6 46558701 46562903 PCT