Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00642 ATGGGCTTTCTCCGGCGACTCTTCGGCGCCAAGAAACACCACAATCCGCCACCCTCCGACGGCCCACCTCCCAAACCCGTCAAGGATAAGAAAGCATGGAACTTCGTGAAGCAGAGTACGAGGTACAAGTCGACCACGTTGCTCTCACATAACAACAACAACTTTGACCCTTCTACTTCCTCTGCTCCTTTCTCCGACTCCTTGGACGCCAACAAGCATGCCATCGCCGTCGCAGCGGCTACCGCCGCCGTCGCAGAGGCCGCTCTCGCCGCCGCCCACGCAGCAGCCGAGGTCGTGAGGCTGACCAGCGGCAATGGGCCTGCCGCCGGAAGACCCGCCTCGGCGTCTCATCGCCGGCAGGCGGCTGAGGATATCACCGCCGCCGCCGTGAGGATTCAGTCGGCGTTCCGAGGTTACTTGGCAAGGAGGGCTTTGAGAGCACTTAAAGCATTGGTGAAGTTGCAAGCATTGGTGAGAGGCCACATTGTGAGAAAGCAAACTACAGATATGCTCAGGCGCATGCAGACTTTGGTGCGACTGCAGTCTCGGGCGCGTGCCACACGTGGGAACTTGTCTGATAATATGCATTCTTTCAAGTCTTCACTTTCTCATTACCCTGTCCCTGAAGATTATCAGCACTCACTTTATGCCTATAGTACGAAATTTGATGGATCTATTCTCAAGAGATGTAGTTCCAACGCAAATTTTAGAGACGTTGACTTGGAGAAAGCCCGGTTTGGTTCCCATTGGCTAGACAATTGGATGGAAGAAAATTCTTGGAGCCAAACTAGAGATGGTTCATTGAAAAATGGGCACCTTGATGATGAGAAGAGTGACAAGATTCTTGAAGTGGATACTTGGAAGCCACACTTGAACTCGCACCATAGTAGTGGCAGCTCATTTCAGCCAGCACATCATTATTTGTCTTCTGATTACAACAATGAGAATTTTGTGGCATATGAGTCTCCATCGAAACGTTCTTCAAAAACTCTATATCCAAGTCTCTCTTCAAGGGAGGTTCTACCCTTTGGCTCTCTGAAACTTCACAAAGGAAAAGAAGAAGCATCTTTGAGAAATGTTGAGGATAGTCCTCAGGCATTCTCTTCTTCCTCTGGACTTGGAAGTGGTGCAAGGAGAGGTCCATTCACCCCAACTAAGAGTGAGTGTGCATGGAGTGTCTTCAGTGGCTATTCAGGTCATCCCAATTACATGTCAAATACTGAATCTTCAAGAGCCAAGGTTAGATCACATAGTGCTCCAAGACAAAGAATTGAGTTTGAGAGATACGGTTCCACAAGAAGGTCTCTTCAGGGTTATTGGGATGCAGGACCTAGTTCAGATAGGGATTCTGATTTTAGAAGCAAGGCCTATTCTACCACAAACAGCAGCTTGAACAGAATTGGGAGTGCCAATTTAAGGTGA 1422 0.4909 MGFLRRLFGAKKHHNPPPSDGPPPKPVKDKKAWNFVKQSTRYKSTTLLSHNNNNFDPSTSSAPFSDSLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSGNGPAAGRPASASHRRQAAEDITAAAVRIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQTTDMLRRMQTLVRLQSRARATRGNLSDNMHSFKSSLSHYPVPEDYQHSLYAYSTKFDGSILKRCSSNANFRDVDLEKARFGSHWLDNWMEENSWSQTRDGSLKNGHLDDEKSDKILEVDTWKPHLNSHHSSGSSFQPAHHYLSSDYNNENFVAYESPSKRSSKTLYPSLSSREVLPFGSLKLHKGKEEASLRNVEDSPQAFSSSSGLGSGARRGPFTPTKSECAWSVFSGYSGHPNYMSNTESSRAKVRSHSAPRQRIEFERYGSTRRSLQGYWDAGPSSDRDSDFRSKAYSTTNSSLNRIGSANLR 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00642 473 ProSiteProfiles IQ motif profile. 125 153 IPR000048 GO:0005515
Phco5g00642 473 Pfam IQ calmodulin-binding motif 149 166 IPR000048 GO:0005515
Phco5g00642 473 Pfam IQ calmodulin-binding motif 126 146 IPR000048 GO:0005515
Phco5g00642 473 MobiDBLite consensus disorder prediction 352 381 - -
Phco5g00642 473 MobiDBLite consensus disorder prediction 361 376 - -
Phco5g00642 473 SMART iq_5 124 146 IPR000048 GO:0005515
Phco5g00642 473 SMART iq_5 147 168 IPR000048 GO:0005515
Phco5g00642 473 MobiDBLite consensus disorder prediction 455 473 - -
Phco5g00642 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 170 IPR027417 -
Phco5g00642 473 ProSiteProfiles IQ motif profile. 149 176 IPR000048 GO:0005515
Phco5g00642 473 MobiDBLite consensus disorder prediction 1 31 - -
Phco5g00642 473 MobiDBLite consensus disorder prediction 437 473 - -
Phco5g00642 473 Gene3D - 122 176 - -
Phco5g00642 473 PANTHER IQ-DOMAIN 5-RELATED 35 445 - -
Phco5g00642 473 Pfam Protein of unknown function (DUF4005) 363 437 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00642 Phco-Chr5 6414951 6419274 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00642 5 6414951 6419274 Phco5g00642 5 6414951 6419274 ECH
Phco5g00642 5 6414951 6419274 Phco6g02512 6 46558701 46562903 PCT