Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02475 ATGCCAGCTCCAACCACACTCACCGGATTGCTCCACCACGTCGCCGGAATATTCCCTTCCCACCGTGCCGTCTCCGTCTCAGGCAAATTCCACCTCACACACTCCCGCCTCCACCACCTTGTCGAACGCGCTGCCGCACGCCTCCTCTCCACCGGCGTCAAACCCGGCGATGTCGTAGCACTCACTTTCCCCAACACCGTCGAGTTTATAATAACATTTCTGGCCATCATTCGGGCGCGAGCCACAGCGGCGCCGTTGAACGCGGCTTACACAGCGGAAGAGTTCGAGTTTTATTTATCCGATTCAGAGTCAAAGCTTTTAATAACGTCCAAAGAAGGGAACGGGCCGGCTCAAGCCGCGGCTTCCAAGCTTAGCATTCCGGTATCAACAGCTTCGCTTGACGAAGCCGAAGCCGAAGAGCTCAGTCTCTCTCTGAGTTACACCGAGTCACCGACCGACTCGATTTCCGAACTCGTTAACGACGCGTCCGACGTGGTACTGTTCCTCCACACTTCCGGTACTACGAGCCGCCCCAAGGGCGTGCCGTTGACGCAGCACAACTTGGCTTCATCGGTGGAGAACATCAAGTCCGTGTACAGACTCACTGAGTCCGACTCGACCGTCATCGTTCTCCCATTGTTCCACGTCCACGGGTTACTCGCGGCGTTGCTGAGTTCACTCGCCGCGGGAGCCTCCGTGGCGCTCCCGGCGGCGGGGAGGTTCTCCGCCTCCTCGTTTTGGAGCGACATGTTGACGTACAACGCCACGTGGTACACCGCGGTTCCTACGGTGCACCAAATCGTTTTGGAGCGTCATTTGAAAACCCCGGAACCGGTTTACCCGAAGCTCCGGTTTATTCGGAGCTGTAGTGCCTCGCTTGCACCGGTTATATTGGAGCGGTTGGAGGAGGCGTTTGGGGCACCGGTTTTGGAGGCTTATGCTATGACGGAAGCGTCGCATTTGATGTCGACGAATCCGTTACCCGAAGATGGGCCTCATCGGGCCGGGTCGGTTGGAAAGCCCGTGGGCCAGGAAATGGCAATATTGGATGAGAAGGGTGAGATTCTAAAGAATAATATGAAAGGTGAGGTTTGTATCAGGGGACCCAATGTGACCAAAGGGTATAAAAATAACCCTGATGCGAATCTTTCTGCCTTTCAATATGGGTGGTTCCACACCGGTGATATCGGGTTTTTTGATTCGGATGGGTATTTGCACCTCGTGGGTCGCATCAAGGAGCTTATTAACCGTGGAGGGGAGAAAATATCACCATTAGAGGTGGATGCTGTCCTTCTTTCTCATCCAGACATCGCCCAAGCAGTTGCATTCGGAGTTCCAGATGACAAATATGGCGAAGAGATAAATTGTGCGATCATCCCAAAAGAAGGATCAAACATTGATGAGGTAGAGGTGCAGAGTTTTAGCAAGAAGAACCTTGCAACCTTCAAAGTCCCTAAAAAGGTCTTCATCACTGATTCTTTGCCCAAGACCGCCACCGGGAAGATTCTTAGGCGTCTTGTTGCAGAATACTTCGTTTCTCAAACTTGA 1548 0.5329 MPAPTTLTGLLHHVAGIFPSHRAVSVSGKFHLTHSRLHHLVERAAARLLSTGVKPGDVVALTFPNTVEFIITFLAIIRARATAAPLNAAYTAEEFEFYLSDSESKLLITSKEGNGPAQAAASKLSIPVSTASLDEAEAEELSLSLSYTESPTDSISELVNDASDVVLFLHTSGTTSRPKGVPLTQHNLASSVENIKSVYRLTESDSTVIVLPLFHVHGLLAALLSSLAAGASVALPAAGRFSASSFWSDMLTYNATWYTAVPTVHQIVLERHLKTPEPVYPKLRFIRSCSASLAPVILERLEEAFGAPVLEAYAMTEASHLMSTNPLPEDGPHRAGSVGKPVGQEMAILDEKGEILKNNMKGEVCIRGPNVTKGYKNNPDANLSAFQYGWFHTGDIGFFDSDGYLHLVGRIKELINRGGEKISPLEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPKEGSNIDEVEVQSFSKKNLATFKVPKKVFITDSLPKTATGKILRRLVAEYFVSQT 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02475 515 FunFam 4-coumarate--CoA ligase 2 413 514 - -
Phco6g02475 515 ProSitePatterns Putative AMP-binding domain signature. 168 179 IPR020845 -
Phco6g02475 515 SUPERFAMILY Acetyl-CoA synthetase-like 5 513 - -
Phco6g02475 515 CDD FACL_fum10p_like 19 509 IPR045310 GO:0016874
Phco6g02475 515 Gene3D - 1 410 IPR042099 -
Phco6g02475 515 Gene3D - 411 513 IPR045851 -
Phco6g02475 515 Pfam AMP-binding enzyme 16 417 IPR000873 -
Phco6g02475 515 FunFam Peroxisomal-coenzyme A synthetase 6 410 - -
Phco6g02475 515 Pfam AMP-binding enzyme C-terminal domain 426 501 IPR025110 -
Phco6g02475 515 PANTHER ACYL-COA SYNTHETASE 17 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02475 Phco-Chr6 46193493 46197633 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00698 5 7320476 7324376 Phco6g02475 6 46193493 46197633 ECH
Phco6g02475 6 46193493 46197633 Phco6g02475 6 46193493 46197633 ECH
Phco5g00698 5 7320476 7324376 Phco6g02475 6 46193493 46197633 PCT