Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02448 ATGGACGCTCCCCTGCTGGTGAACGGCGAGGGGGCGGCGCTGCTGGCGGAGGACGGCGACTACGTGCCGGCGAGGGAGTTCAAGAACGTTAGGGAGGTGTTCTGGATCGAAACCAAGAGGATGTGGGTGATTGCGTTGCCCATTGTTTTCAACATATGGTGCCAATTCGGTGTAAACTCTGTCACCAGCATCTTCGTTGGACATCTCGGTGACATTGAGCTCTCTGCTGTCTCTCTCATCAATTCCGTCATTGGCAGTTTCGCCTTTGGTTTCATGCTTGGGATGGGAAGTGCAACAGAGACGCTATGTGGACAAGCTTTCGGAGCTGGGCAGGTTAATATGCTTGGCATTTATATGCAACGCTCATGGGTGATTTTATCTGTGACCAGTATTTTGCTCTTGCCAATATACATTTTTGCTGCTCCAATTTTGAAGCTTCTTGGTCAACAGACAGATATAGCTGATCTTGCTGGGAATTTCGCTATTTTAGTAATTCCACAATTTCTTTCGCTTGCCTTCAATTTTCCAACGCAAAAGTTCCTTCAAGCTCAGAGTAAGGTTAACGTCATTGCATGGATTGGGTTGGTGGCTTTAGTTCTGCACGTTGGGATGCTCTGGCTCTTAGTTTATACGTTAGAGTTAGGCTTAACTGGTGCAGCTTTGGCATTTGATATCACGAGTTGGGGGATTACAGCGGCTCAACTTATTTATGTTGTGGTCTGGTGTAAGGATGGATGGAATGGATTGTCATGGTTGGCTTTTAAGGATATTTGGGCCTTTGTTAGGCTCTCTCTTGCATCAGCTGTAATGCTTTGCCTTGAAGTATGGTATATGATGAGTGTCATAGTTCTTGCTGGCCACCTTGATAATGCAGTGATTGCTGTTGATTCCCTCTCTATATGCATGAATATCAATGGGTGGGAAGGCATGATCTTCATCGGAATAAATGCAGCTGTCAGTGTCAGAGTTTCCAATGAACTTGGGCTTGGACGTCCAAGAGCTGCCAAGTACTCTGTCTACGTGACAGTCTTTCAGTCACTTCTCTTGGGAGTCTTTTTCATGGCTATTGTTTTGACGGCCAAAAACTATTATGCCCTTATTTTTACTAACAGTTTGGTTTTGCAAGAGGCCGTTTCGAAGCTAGGAGTCCTCCTGGCTATTACAATGGTTCTGAACAGTGTTCAACCAGTGATTTCAGGTGTTGCTGTTGGAGGTGGGTGGCAGGCCCTGGTGGCCTACATCAACATCGGCTGTTACTATTTATTTGGGCTTCCACTGGGGTTCCTTCTTGGTTATAAAGCAAATTTAGGGGTTGAGGGTCTTTGGGGTGGTATGATATGTGGAATTCTTCTCCAGACCTTCCTGCTCATGTTGATACTTTACAAAACCAATTGGAAGAAAGAGGTGGAACAAACAAATGCTCGCATGCTGATATGGGGTGGACAACAAATTGAGGTTGATAAAATTGCTGCTTCTGCATAA 1482 0.4548 MDAPLLVNGEGAALLAEDGDYVPAREFKNVREVFWIETKRMWVIALPIVFNIWCQFGVNSVTSIFVGHLGDIELSAVSLINSVIGSFAFGFMLGMGSATETLCGQAFGAGQVNMLGIYMQRSWVILSVTSILLLPIYIFAAPILKLLGQQTDIADLAGNFAILVIPQFLSLAFNFPTQKFLQAQSKVNVIAWIGLVALVLHVGMLWLLVYTLELGLTGAALAFDITSWGITAAQLIYVVVWCKDGWNGLSWLAFKDIWAFVRLSLASAVMLCLEVWYMMSVIVLAGHLDNAVIAVDSLSICMNINGWEGMIFIGINAAVSVRVSNELGLGRPRAAKYSVYVTVFQSLLLGVFFMAIVLTAKNYYALIFTNSLVLQEAVSKLGVLLAITMVLNSVQPVISGVAVGGGWQALVAYINIGCYYLFGLPLGFLLGYKANLGVEGLWGGMICGILLQTFLLMLILYKTNWKKEVEQTNARMLIWGGQQIEVDKIAASA 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02448 493 NCBIfam MATE family efflux transporter 47 442 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco6g02448 493 CDD MATE_eukaryotic 37 471 IPR045069 GO:0042910|GO:1990961
Phco6g02448 493 Pfam MatE 47 206 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco6g02448 493 Pfam MatE 267 429 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco6g02448 493 PANTHER MULTIDRUG RESISTANCE PROTEIN 30 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02448 Phco-Chr6 45912829 45916420 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02448 6 45912829 45916420 Phco6g02448 6 45912829 45916420 ECH
Phco5g00739 5 8227403 8230258 Phco6g02448 6 45912829 45916420 PCT