Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00739 ATGGATACACCATTGGTGATCCAAAAGTTGAGTTCAGAATCTGACTATTTGGCAGTGAAAAGGTTAAAGGATGTTAAATTTGTTTTGTGGACAGAGACAGTGAAGATATGGAGGATAGCATTCCCAGTGGCATTGACCCATCTGTTTCAGTTCCTCACAAACTCCTCAACTTCCATCTATGCTGGTCATCTTGGGGACATTGAACTCTCTTCTATCTCTGTTAGCCAAGGGGTCATCAGTTCCATATACTTTAACTTGCTGTTCGGTATGTCATCTGCACTGGCAACACTTTGTGGCCAAGCTTTTGGAGCAGGGAAAATTCAATCTACTTGTATTTATGTTCAAAGGTCATGGATTATACTTACCATCACTTGTACAATCCTCTTGCCTATTTATGTATATGCCACACCAATCTTAAAGTTGCTAGGCCAAGATGAAGGAATAGCTGATCTTGCTGGCACATATACTATACAATTGATTCCCCACATGTTTTCCTTTGCAATAGTTTTTCCCACCATGAGATTTCTTCAGGCCCAGAGCAAGGTTAAAGTTATCATGTGCATAGCATTTGTGGTTGTGCTCATTCAAAACGGGTTGCTTTACATGTTCATAAGTGTATTTGGTTGGGGTACAACTGGTTTGGCCATGGTGAGTAACATCATAGGGTGGCTCTATGCTGTGGCTTTGGTTGTGTACACCACTGGATGGAGCAAGGAAGAATGGAGTGGATTTTCTTGGATGGCATTTAGGGATTTATGGCCAATTGCTAAGTTAAGCCTTGCATCATCTGTCATGATTTGCTTAGAGCAATGGTATCTTACATGCATCATGCTCCTTGTAGGTCTACTAGACAATCCTGTGATTTCTGTTGGTTCCTATTCTATTTGCTTAAATTTTCAGGGTTGGTACTACACGCTGCTTCTTGGTATAAACACAGCCATAAGTGTTCGTGTCTCCAACACACTTGGCATGTCACATCCAAGAGCAGCCAAATACTCTTTCTATGTGGCAATGTCCCAGTCTCTCCTCCTTGGTATTCTTTTCATGGCACTTATTTTCCTCACTAAAGAAGATTTGGCCACCATCTTTACCAATAGTGAGGATATGATACTAGCTGTTGCTGATTTAGCATACCTTCTTGGTATAACAATGGTTCTCAACAGCGCATCACAGGTCATATCAGGTGTGGCCATTGGAAGTGGATGGCAAGTGATGGTTGCTTACATAAACATGGCATGTTATTACATTGTTGGCCTCCCAATTGGAATTTTCCTTGGTTTCAACCAGCATTTAGGGGTCAAGGGTCTCTGGGGAGGCACAATGTGTGGCAGTGTTCTGCAGATTTTAGTCCTCTTACTGATTATTTGGAAGACTAATTGGACCAAGGAGGTGGAGCAAACAGGTCATCGCATACGCACATGGAACATTGACAACCACCACTCAGATGTCATAGAGAATGTTACATGA 1467 0.4192 MDTPLVIQKLSSESDYLAVKRLKDVKFVLWTETVKIWRIAFPVALTHLFQFLTNSSTSIYAGHLGDIELSSISVSQGVISSIYFNLLFGMSSALATLCGQAFGAGKIQSTCIYVQRSWIILTITCTILLPIYVYATPILKLLGQDEGIADLAGTYTIQLIPHMFSFAIVFPTMRFLQAQSKVKVIMCIAFVVVLIQNGLLYMFISVFGWGTTGLAMVSNIIGWLYAVALVVYTTGWSKEEWSGFSWMAFRDLWPIAKLSLASSVMICLEQWYLTCIMLLVGLLDNPVISVGSYSICLNFQGWYYTLLLGINTAISVRVSNTLGMSHPRAAKYSFYVAMSQSLLLGILFMALIFLTKEDLATIFTNSEDMILAVADLAYLLGITMVLNSASQVISGVAIGSGWQVMVAYINMACYYIVGLPIGIFLGFNQHLGVKGLWGGTMCGSVLQILVLLLIIWKTNWTKEVEQTGHRIRTWNIDNHHSDVIENVT 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00739 488 NCBIfam MATE family efflux transporter 42 437 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco5g00739 488 Pfam MatE 42 197 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco5g00739 488 Pfam MatE 263 422 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco5g00739 488 PANTHER MULTIDRUG RESISTANCE PROTEIN 28 460 - -
Phco5g00739 488 CDD MATE_eukaryotic 32 466 IPR045069 GO:0042910|GO:1990961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00739 Phco-Chr5 8227403 8230258 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00739 5 8227403 8230258 Phco5g00739 5 8227403 8230258 ECH
Phco5g00739 5 8227403 8230258 Phco6g02448 6 45912829 45916420 PCT