Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02342 ATGGATACTACGGGGAGACTTGTTGCAAGTTCACATAACCGGAATGAGTTTATTCTCATCAATGCTGATCAAACTGCAAGGGTGAACGCTGTCACAGTGTTGTGTGGGCAAATTTGCCAGATCTGTGGGGATGAGATAGAGATTACTGTGGATGGTGAACCGTTTGTTGCATGTAATGAATGTGCATTCCCGGTGTGTAGACCTTGCTATGAGTATGAAAGAAGAGAGGGGAACCAAGCTTGCCCTCAGTGCAAAACCAGATACAAGCGCCTAAAGGGTAGTCCTAGAGTTGAGGGTGATGAGGAAGAAGAGGACATTGATGATTTGGAAAATGAGTTTGACATTGGAAGCAATATCAGACATGGTCACGTTGATGCCATGCTCTCTGCTCACCACAACGCTGGCCATGGTTCACAAATGACTGTTCCAGGGATCACCACACCATCAGAGTTTGGTGCATCTTCTGTGGCTGCTGATATTCCTCTTCTGACATATGATCACGAGGATATTGGGATTTCTGCTGATAAACATGCTCTAATTATTCCCCCATTCATGTCTCGTGGGAAACGGGTTCATCCTATGCCTTTTCCTGATTCATCCGTGCCAGTTCAACCCAGACCATTGGATCCTAAAAAAGATTTAGCGGTTTATGGATATGGAAGTGTTGCATGGAAAGAACGAATGGAGGAGTGGAAGAAAAGACAGAATGAAAAAATTGAGGTGCATGAAGAGGGTAACGATGGTGGGAAAAATGGTGATGAGCTTGATGACCCTGATTTGCCAAAAATGGACGAAGGCAGGCAGCCACTATGGAGGAAGTTGCCAATTAGTCCAAGCAAGATTAGTCCATATCGAATCATAGTAGTACTTCGGATTGTTGTTCTTGGCCTATTTTTTCATTATAGAATTCTCCACCCGGTCAATGATGCATATGCATTGTGGCTGACATCAGTAGTATGTGAAATCTGGTTTGCCGTGTCATGGGTTTTGGATCAATTTCCCAAATGGTGTCCAATTGAGCGAGAAACATACCTGGATCGTTTGTCATTGAGGTACGAGAAAGAAGGAAAGCCATCTGAATTAGCTGATATAGACGTTTTTGTTAGTACAGTTGATCCTACGAAAGAACCTCCCCTTATAACTGCAAATACAGTTCTATCCATCCTTGCTGTAGATTATCCAGTGGAGAAAGTTGCATGTTACGTCTCAGATGATGGTGCAGCTATGCTTACATTTGAAGCCCTTTCAGAGACTTCTGAATTCGCAAGAAAGTGGGTTCCATTTTGTAAGAAGTTCAGCATTGAACCTCGGGCTCCTGAATGGTATTTTGCTCAGAAGGTTGACTATCTGAGAGACAAAGTGGATGTAATATTCATCAGGGAGCGTCGTGCTATTAAGAGGGAGTATGAAGAGTTCAAAGTGCGTATCAATGCATTGGTTGCAATGGCACAGAAGGTTCCTGAGGATGGCTGGACAATGCAGGATGGGACTCCGTGGCCTGGAAACACTGTCAGGGATCATCCTGGAATGATTCAAGTTTTCCTTGGTCAAAATGGTCTTCGTGATATTGAAGGGAATGAGTTACCTCGTCTTGTCTATGTTTCCCGTGAGAAAAGACCAGGATTTGAACACCACAAAAAAGCTGGTGCAATGAATGCCTTGGTGCGAGTCTCAGCAGTAATTTCAAATGCTCCGTACCTACTCAATGTCGATTGTGATCACTACATAAACAACAGCAAAGCACTTCGTGAAGCCATGTGCTTCATGATGGATCCTACATCAGGGAAAAAAATATGCTATGTACAATTTCCTCAAAGATTTGATGGGATCGATCGTCATGATAGATACTCAAATCGCAATGTTGTATTCTTTGATATAAACATGAAAGGTTTAGATGGCATCCAAGGACCAATATATGTAGGAACTGGGTGTGTCTTTAGAAGGCAGGCACTCTATGGATATGATGCCCCTGCTAAGAAGAAACCAGCAAGTAAGACTTGTAACTGTTGGCCCAAATGGTGCTGTCTGTGTTGTGGATCTAGGAACAAAAATAGGAAAGTGAAGTCAAGTCCAAGAAAGAAGATAAAAAAGAAGGATGCTACAAAGCAAATACATGCACTAGAAAATATTGAAGAGGGAATTGAAGGAATTGACAGTGAGAAGTCGTGGTTAATGTCACAACTAAAATTTGAGAAAAAGTTTGGGCAATCACCTGTTTTCATAGCTTCAACGCTTATGGAAGATGGGGGTGTTCCAAAAGGAGCAACATCTGCATCACTCTTGAAAGAAGCCATTCATGTCATCAGTTGTGGTTATGAAGATAAGACAGAGTGGGGGAAAGAGGTTGGATGGATATATGGTTCTGTTACAGAAGATATATTGACAGGTTTCAAAATGCACTGTCACGGTTGGCGGTCTGTGTACTGCATGCCTAAAAGGCCTGCTTTTAAGGGCTCAGCTCCCATAAATCTTTCAGATCGTCTACATCAAGTTCTCCGTTGGGCACTTGGATCTGTTGAGATACTGTTGAGTAGGCATTGTCCAATATGGTATGGATATGGTTGTGGGTTGAAATGGCTGGAGCGCTTTTCTTACATAAACTCAGTAGTTTATCCTTTAACATCACTTCCCTTAATTGCATACTGCACCCTGCCTGCTGTCTGTCTACTCACTGGAAAGTTCATAGTCCCTGAGATTAGCAACTACGCCAGTATCATTTTTATGGCACTCTTCGTCTCCATTGCTGCAACAGGCATCCTTGAAATGCAGTGGGGAGGTGTTGGTATACATGACTGGTGGAGGAATGAGCAGTTCTGGGTCATTGGTGGTGCCTCCTCACACCTCTTCGCTCTCTTTCAGGGTTTGCTCAAGGTTCTGGCAGGAGTTAACACAAACTTCACAGTCACATCCAAAGCTGCAGATGATGGAGACTTTGCTGAACTCTACCTCTTCAAGTGGACATCACTGTTGATCCCTCCTTTGACCTTGCTCATCATTAACATAGTTGGTGTTATTGTAGGTGTTTCAGATGCAATAAACAATGGTTATGATTCATGGGGTCCTCTATTTGGCAAATTATTTTTTGCTCTTTGGGTCATTGTCCATCTTTACCCCTTCCTCAAGGGAGTCATGGGAAAACAGGAAGGTGTTCCCACCATCATTTTGGTCTGGTCTATTCTTCTGGCTTCAATCTTCTCACTTCTATGGGTGAGGATCAACCCATTTTTGTCAAAAGATGACATTGTGTTGGAACTTTGTGGGTTGAATTGTGACTAG 3276 0.4298 MDTTGRLVASSHNRNEFILINADQTARVNAVTVLCGQICQICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEEDIDDLENEFDIGSNIRHGHVDAMLSAHHNAGHGSQMTVPGITTPSEFGASSVAADIPLLTYDHEDIGISADKHALIIPPFMSRGKRVHPMPFPDSSVPVQPRPLDPKKDLAVYGYGSVAWKERMEEWKKRQNEKIEVHEEGNDGGKNGDELDDPDLPKMDEGRQPLWRKLPISPSKISPYRIIVVLRIVVLGLFFHYRILHPVNDAYALWLTSVVCEIWFAVSWVLDQFPKWCPIERETYLDRLSLRYEKEGKPSELADIDVFVSTVDPTKEPPLITANTVLSILAVDYPVEKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFAQKVDYLRDKVDVIFIRERRAIKREYEEFKVRINALVAMAQKVPEDGWTMQDGTPWPGNTVRDHPGMIQVFLGQNGLRDIEGNELPRLVYVSREKRPGFEHHKKAGAMNALVRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKKPASKTCNCWPKWCCLCCGSRNKNRKVKSSPRKKIKKKDATKQIHALENIEEGIEGIDSEKSWLMSQLKFEKKFGQSPVFIASTLMEDGGVPKGATSASLLKEAIHVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSLPLIAYCTLPAVCLLTGKFIVPEISNYASIIFMALFVSIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKAADDGDFAELYLFKWTSLLIPPLTLLIINIVGVIVGVSDAINNGYDSWGPLFGKLFFALWVIVHLYPFLKGVMGKQEGVPTIILVWSILLASIFSLLWVRINPFLSKDDIVLELCGLNCD 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02342 1091 FunFam Cellulose synthase 21 112 - -
Phco6g02342 1091 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 268 1058 - -
Phco6g02342 1091 SUPERFAMILY RING/U-box 29 107 - -
Phco6g02342 1091 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Phco6g02342 1091 CDD mRING-HC-C4C4_CesA 37 87 - -
Phco6g02342 1091 SUPERFAMILY Nucleotide-diphospho-sugar transferases 373 890 IPR029044 -
Phco6g02342 1091 FunFam Cellulose synthase 481 655 - -
Phco6g02342 1091 Pfam Cellulose synthase 364 1080 IPR005150 GO:0016020|GO:0016760|GO:0030244
Phco6g02342 1091 Pfam Zinc-binding RING-finger 34 105 IPR027934 -
Phco6g02342 1091 MobiDBLite consensus disorder prediction 240 262 - -
Phco6g02342 1091 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 510 658 IPR029044 -
Phco6g02342 1091 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02342 Phco-Chr6 44622052 44627472 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00974 5 16734363 16743386 Phco6g02342 6 44622052 44627472 PCT