Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02018 ATGGAGGGAAGAGAGAGTTTTGGTGTTGTGGTGGGTGATGACGCCCCGGAGAGCTTCCATGTGGCTCCTAGAATAATTGAGAACAACTTGGACTTTTCAAGGGCCGTCGTGCCGGTGCCTTCGCCGGCGACTGAGGGTAAAAAGAAGAGAGGGAGACCGAGGAAGTATGGGCCGGACGGGAAGGTGGCTATGGGGCCGGTGACGGCGCTTTCGCCGATGCCGATTTCTTCGTCGATTCCGTTGACCGGCGAGTTCTCCGCTTGGAAGAGAGGTAGAGGAAGGCCTGTTGAATCTATCAAAAAGTCATCGTTCAAGTTTGAGGTTGAAAGCCCTGTTCAAGGTGATGGAGTAGCATACTCAGTCGGTGCCAATTTCACACCACATGTGCTCACAGTAAATGCTGGCGAGGATGTCACCATGAAAATCATGTCCTTCTCACAACAAGGATCACGTGCTATATGCATTCTCTCTGCAACTGGAACAATTTCAAATGTTACACTTCGTCAACCATCTTCTTGTGGGGGTACTTTAACATATGAGGGAAGGTTTGAAATTCTTTCCTTGTCTGGTTCCTTTATGCCAACTGAGAATGGAATTACAAGAAGCAGATCTGGTGGAATGAGTGTCTCTTTGGCCGGTCCAGATGGTAGAGTAATGGGGGGTGGACTTGCTGGTTTGCTGGTAGCTGCTGGTCCAGTTCAGGTTGTGGTGGGCAGTTTTCTTCCTGGTCACCAGTTGGAGCATAAAAACAAGAAGCAAAGGGTGGAGTTTATATCAACTATTACCCCTTCACCTGTTAATATCATCTCCAGTGAGGAACTAAAAGTCAGTTTTGGTGGAGTAAAGCCTATTATGACACCTGCTGCTTTTCAAGAAGAGAATATTGTTTCTTTTAACAATGGTCAAGACTCTAGAAACTCATCTGCTGATGATAAAGATCCTTTGCCCGACAAGGAGTCTAATCTAAGCCAATCAAAAGCTGAGGCTGCATGCTAA 996 0.4709 MEGRESFGVVVGDDAPESFHVAPRIIENNLDFSRAVVPVPSPATEGKKKRGRPRKYGPDGKVAMGPVTALSPMPISSSIPLTGEFSAWKRGRGRPVESIKKSSFKFEVESPVQGDGVAYSVGANFTPHVLTVNAGEDVTMKIMSFSQQGSRAICILSATGTISNVTLRQPSSCGGTLTYEGRFEILSLSGSFMPTENGITRSRSGGMSVSLAGPDGRVMGGGLAGLLVAAGPVQVVVGSFLPGHQLEHKNKKQRVEFISTITPSPVNIISSEELKVSFGGVKPIMTPAAFQEENIVSFNNGQDSRNSSADDKDPLPDKESNLSQSKAEAAC 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02018 331 SMART AT_hook_2 89 101 IPR017956 GO:0003677
Phco6g02018 331 SMART AT_hook_2 47 59 IPR017956 GO:0003677
Phco6g02018 331 MobiDBLite consensus disorder prediction 298 331 - -
Phco6g02018 331 Gene3D - 127 258 - -
Phco6g02018 331 ProSiteProfiles PPC domain profile profile. 122 264 IPR005175 -
Phco6g02018 331 MobiDBLite consensus disorder prediction 37 62 - -
Phco6g02018 331 Pfam Plants and Prokaryotes Conserved (PCC) domain 127 240 IPR005175 -
Phco6g02018 331 FunFam AT-hook motif nuclear-localized protein 1-like 127 257 - -
Phco6g02018 331 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 309 IPR039605 GO:0003680
Phco6g02018 331 CDD DUF296 126 240 IPR005175 -
Phco6g02018 331 SUPERFAMILY AF0104/ALDC/Ptd012-like 124 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02018 Phco-Chr6 39907592 39913467 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00562 5 5256224 5261413 Phco6g02018 6 39907592 39913467 ECH
Phco6g02018 6 39907592 39913467 Phco6g02018 6 39907592 39913467 ECH
Phco5g00562 5 5256224 5261413 Phco6g02018 6 39907592 39913467 PCT