Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00562 ATGGAGGAAAGAGAGATTTTTAGTTCTGGGCAGGCTGTTAAGGTTGTCGAGCCCCCCCAGAGCTTCCACGTGGCACTAAACTCCGTGCAGTTTTCTGGGCCCACGGTGGATTCGCCGGCACCGGTGAATGCTCCGGTGATTACTTCCGGTAGTACAGATGGGAAGAAGAAGAGGGGCCGGCCTAGGAAATATGGACCAGACGGCAATGTGGCGCTGTCGCCGATGCCGATATCGTCGTCGATTCCATTGACCGGAGACTTCTCAGGCTGGAAAAGGGGCAGAGGAAGGCCAGCTGAATCAATCAAGAAGTCTTTCAAGTTTTACGAAGTTGAAGGTCAAGGTGCAGGACCAGGCGATCAAATTGCATACTCAGTTGGTGCCAATTTCACACCTCACATCCTTATAGTAAATGCTGGCGAGGATGTTACTATGAAGATTATGTCCTTCTCTCAGCAAGGATGTCAGGCGATCTGCGTGCTCTCTGCAAACGGCACAATTTCAAATGTTACACTACGCCAACCAACTTCTTCTGGTGGTACTTTAACATATGAGGGACGCTTTGAAATTCTTTCCTTGACTGGTTCATATATGCCAACTGAGAATGGGTTTACAAAGAGCAGATCTGGTGGGATGAGCATCTCTTTGGCCGGGCCAGATGGTCGAGTAATGGGGGGTGGACTGGCTGGTTTGCTGGTAGCTGCTGGTCCTGTGCAGGTTGTTGTGGCTAGTTTTGTTCCTGGTCACCAGCTGGAGCAGAAACCGAAGAAGACAAGGGTGGAGCATGTACCAATGACTGCCCCTGCCCCTGCCCCTATACCCGTCAACTCCACTCCAGCTGAAGATATAAGAATTGATCTTGGTGGAGTAAAGCCAATCTTGACCCCAGCTGCTTTTCAAATGGACAGTATCTTTGGCAATGGACAACTTTCTGATGATGAGGCTCCTTTCCCTGAAGATGAACCTAACACAAGCTATGAAGATGCTGGAGTTGCAAGCTAA 999 0.4975 MEEREIFSSGQAVKVVEPPQSFHVALNSVQFSGPTVDSPAPVNAPVITSGSTDGKKKRGRPRKYGPDGNVALSPMPISSSIPLTGDFSGWKRGRGRPAESIKKSFKFYEVEGQGAGPGDQIAYSVGANFTPHILIVNAGEDVTMKIMSFSQQGCQAICVLSANGTISNVTLRQPTSSGGTLTYEGRFEILSLTGSYMPTENGFTKSRSGGMSISLAGPDGRVMGGGLAGLLVAAGPVQVVVASFVPGHQLEQKPKKTRVEHVPMTAPAPAPIPVNSTPAEDIRIDLGGVKPILTPAAFQMDSIFGNGQLSDDEAPFPEDEPNTSYEDAGVAS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00562 332 SMART AT_hook_2 91 103 IPR017956 GO:0003677
Phco5g00562 332 SMART AT_hook_2 55 67 IPR017956 GO:0003677
Phco5g00562 332 SUPERFAMILY AF0104/ALDC/Ptd012-like 128 251 - -
Phco5g00562 332 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 36 276 IPR039605 GO:0003680
Phco5g00562 332 MobiDBLite consensus disorder prediction 305 332 - -
Phco5g00562 332 ProSiteProfiles PPC domain profile profile. 126 265 IPR005175 -
Phco5g00562 332 Gene3D - 131 263 - -
Phco5g00562 332 FunFam AT-hook motif nuclear-localized protein 1-like 131 261 - -
Phco5g00562 332 Pfam Plants and Prokaryotes Conserved (PCC) domain 131 245 IPR005175 -
Phco5g00562 332 MobiDBLite consensus disorder prediction 33 71 - -
Phco5g00562 332 MobiDBLite consensus disorder prediction 33 50 - -
Phco5g00562 332 CDD DUF296 130 244 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00562 Phco-Chr5 5256224 5261413 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00562 5 5256224 5261413 Phco6g02018 6 39907592 39913467 ECH
Phco5g00562 5 5256224 5261413 Phco5g00562 5 5256224 5261413 ECH
Phco5g00562 5 5256224 5261413 Phco6g02018 6 39907592 39913467 PCT