Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01994 ATGTCTCGAATCTTCTCTGCATGGAACAAGAAGAAGCTGCATCTCAATTTCTTACCTAGTTTTTTCTCTTCTTGGCACAGCACCAGCACTGGGCTTTTACGGCCCACAATTCTCAAACTCTACTATAGCAGCAATGGGGAGCCACCACAGGATTGGCCTCAGGACGCTGCCGTGCCTTCGCAAACTCCTTTCACTGTTAATTTTGTTCGGGCCTCCTCTGGGCCCCGCCAAGAGAACACTGGGTGGCTCGGAGGCTCCAATTTGGGTAGGGATTTTCCAACTCCCAAGGAAATCTGCAAGGGTCTCGATAAATTTGTTATTGGGCAACACCGGGCCAAGAAGGTGCTCTCTGTAGCGGTTTATAATCACTACAAGAGAATATTCAACGGGTCAGGGGAAGATGCGGGAATCTCCGAAGGATTGGATGATGACGATAATGTGGAGCTGGAAAAGAGTAATGTTCTCTTGATGGGTCCAACTGGTTCAGGGAAGACATTACTTGCGAAAACACTGGCTCGTTTTGTGAATGTTCCCTTTGTCATTGCTGATGCAACTACACTAACGCAGGCTGGTTATGTTGGAGAAGACGTTGAATCAATACTGTATAAACTACTTGCGGCAGCGGAGTTCAATGTTCAAGCAGCTCAACAAGGGATTGTTTACATTGATGAAGTGGACAAGATAACTAAGAAGGCTGAGAGCTTGAATATTAGCCGAGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTAAAAATGCTGGAAGGAACTATAGTAAACGTCCCCGAGAAAGGAGCAAGGAAGCATCCACGGGGTGATAACATACAGATTGACACGAAGAACATTCTCTTTATATGTGGTGGAGCATTTGTTGATCTTGAAAAAACCATTTCTGAGAGACGGCAAGATTCTTCAATTGGTTTTGGAGCACCAATCCGTGCCAATATGAGAACTAATGGAGTTACATATGCTGCAGTAACATCATCTTTACTTGAGTCGGTGGAAAGTGCTGATCTTATTGCATATGGTCTCATCCCAGAGTTTATAGGACGGTTTCCAATCTTAATTAGCTTGTCAGCTCTAACTGAAGACCAACTTATGCAGGTTCTCACAGAACCAAAAAATGCTCTTGCGAAGCAGTACAAGAAGTTATTTGACATGAATAATGTAAAGCTACACTTCACAGAGAAAGCTCTGAGATTGATAGCAAAGAAAGCGATGGGCAAAAATACAGGTGCCAGGGGTTTAAGAGCCTTACTGGAAATCATTTTAACGGAAGCTATGTTTGAGATTCCAGATGTAAAAGCTGGAAATGAATTGATTGATGCAGTTGTTGTTGATGAGGAGTCAGTAGGATCGGTAAATTCCCCTGGCTGTGGTGGAAAAATTCTTTGTGGAGATGGTGCTTTAGATCTGTACCTAGCTAAGATGGAGGGTTCAGTGGTTAACCATGACGTAGCTGAACCAGACTTACAAGAGGGGGAATCAGAGATTTCATCAAGAGCAATGAGCATGTAA 1518 0.4381 MSRIFSAWNKKKLHLNFLPSFFSSWHSTSTGLLRPTILKLYYSSNGEPPQDWPQDAAVPSQTPFTVNFVRASSGPRQENTGWLGGSNLGRDFPTPKEICKGLDKFVIGQHRAKKVLSVAVYNHYKRIFNGSGEDAGISEGLDDDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAAAEFNVQAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKNILFICGGAFVDLEKTISERRQDSSIGFGAPIRANMRTNGVTYAAVTSSLLESVESADLIAYGLIPEFIGRFPILISLSALTEDQLMQVLTEPKNALAKQYKKLFDMNNVKLHFTEKALRLIAKKAMGKNTGARGLRALLEIILTEAMFEIPDVKAGNELIDAVVVDEESVGSVNSPGCGGKILCGDGALDLYLAKMEGSVVNHDVAEPDLQEGESEISSRAMSM 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01994 505 SMART ClpB_D2_small_2 361 454 IPR019489 -
Phco6g01994 505 CDD RecA-like_ClpX 93 358 - -
Phco6g01994 505 Pfam C-terminal, D2-small domain, of ClpB protein 361 430 IPR019489 -
Phco6g01994 505 Pfam AAA domain (Cdc48 subfamily) 150 354 IPR003959 GO:0005524|GO:0016887
Phco6g01994 505 SMART AAA_5 150 308 IPR003593 GO:0016887
Phco6g01994 505 Gene3D - 87 359 IPR027417 -
Phco6g01994 505 Gene3D - 360 460 - -
Phco6g01994 505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 447 IPR027417 -
Phco6g01994 505 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 75 477 - -
Phco6g01994 505 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 360 462 - -
Phco6g01994 505 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 86 359 - -
Phco6g01994 505 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 90 451 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01994 Phco-Chr6 39573379 39579454 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00545 5 5119460 5127747 Phco6g01994 6 39573379 39579454 PCT