Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00545 ATGTCGCGACTCTTTGGTAGATGGAAGAAGGCGAAGGAAATGGCGTCGCTTTCGGGGTTTCTGCCACGTGGGCACCAGCGAATCGGGTTAAATTTTTGCCCAATTTCGACCCAGCTGAATATAGTGTCCGGCCACCGGTGGGATGCTCAGGTGGGGGTTCAGGAGCGGTATAAGTGGGACCGCGGCGGGTCGGACGACAACCCGACCCGGAAGATCCGCGCTGAGGCTAATTGCCCCCGTTGCACTAAAGACATGAATCTTGTGTTCTCCAATCGCCACTTTCCCACCCCACAAAGTGAATCGAATTCTGAATTGGGTGGTGAGGGAGAAAGAGAAAAGGGTTACCAAGCGGTTAACCTTTGCCCAAAGTGCAAAACTGCTTATTACTTTCGCCCTTATGACACTACACCTCTTCAAGGTACTTTCGTGGAGATTGGTAGGGTCAGTAGTACTAACAATAATGGTGTTAATAATGTAAGTGGTAAGGGACATTCTCCTAGAAGGATCACACATGGAAAAGGTGGTGGCAAAGAAGGTGGTAGTAGTACTAGTAGGGCTAGTCATGGAGGAGAGGAATCTGGGCCTAAGAGTAATAGTAATGCAAGTAAATGGCTTGAAGTGTCATTGTGGGAGACTTTGATGGCATACAATGGTGGTGGTGGTAATGGTAGTAATGGGGAGCCACCCGAGTCGTGGCCTGGTGGTAACGGGAATGAGAATGGGTTGGCTGTGCATACTCCTCCAGGCCCACCTTTTGCACCTGGGATTAATGTTATCCGGGCTACGGGGCCTCCGAATGGCGGTTCAGGTGGTGGGGGCGATGGTGAGAAGAATGCCTGGGGAGGGTCTAATCTGGGGAAGGATTTGCCCTCGCCGAAGGAGATATGTAAGGGTCTTGACAAGTTTGTTATTGGCCAAAAGAGAGCGAAGAAGGTGCTTTCTGTAGCTGTTTATAACCACTATAAAAGAATATATCATGCCACTTTACAGAAAGGGTCAACTGTAGATTCAGAAGTATTAGATGATGACGATAATGTGGATCTAGAAAAGAGTAATGTTCTCTTAATGGGTCCAACTGGTTCAGGGAAGACATTACTTGCTAAAACACTGGCTCGATTTGTGAATGTGCCGTTTGTCATTGCTGATGCAACAACCTTAACACAGGCTGGTTATGTTGGGGAAGATGTTGAATCAATATTGTACAAACTACTTGCGGCAGCAGATTTCAATGTTGCAGCAGCTCAACAAGGAATAATTTACATTGATGAAGTTGACAAAATAACTAAGAAGGCTGAGAGCTTAAATATCAGCCGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTAAAAATGCTAGAAGGAACTATAGTAAATGTTCCTGAGAAAGGAGCCAGGAAGCATCCAAGGGGGGATAACATTCAGATGGACACAAAAAATATTCTTTTTATATGTGGTGGAGCATTTATTGATCTTGAAAAAACCATTTCAGAAAGACGACAAGATTCTTCAATTGGTTTTGGAGCACCAGTTCGTGCCAATATGAGAAATGGTGGAATAACAGATTCTGTAGTAACATCATCTTTACTTGAGTCAGTGGAAAGTGCTGATCTTATTGCATATGGCCTTATACCAGAGTTTATTGGACGATTCCCCATCTTAGTCAGCTTGTCAGCTTTAACCGAAGACCAACTTATGATGGTCCTCACTGAACCAAAAAATGCTCTTGGCAAGCAGTACAAGAAATTATTTAGCATGAATAATGTCAAGTTACACTTTACAGAGAAAGCTCTAAGACTGATAGCAAAGAAAGCAATGTCCAAAAATACTGGTGCTAGAGGTTTAAGAGCCCTACTGGAAAGCATTTTAACTGAGGCGATGTTTGAGATTCCTGATATTAAGACGGGAAGTGATCGAATTGATGCAGTTGTTGTTGATGAGGAGTCAGTAGGATCACGAACTTCCCTTGGATGTGGGGGTAAAATTCTCCGGGGAGATGGTGCTTTGGAGCAGTACCTAGATAAGATGAAAGATTCAGCGGTTAATGTTGACGTGGGGGAATCAGATTTACATGAGGGGGATTTGGAGCTTTCATCAAGAGCCATGAGCTTGTAA 2115 0.4459 MSRLFGRWKKAKEMASLSGFLPRGHQRIGLNFCPISTQLNIVSGHRWDAQVGVQERYKWDRGGSDDNPTRKIRAEANCPRCTKDMNLVFSNRHFPTPQSESNSELGGEGEREKGYQAVNLCPKCKTAYYFRPYDTTPLQGTFVEIGRVSSTNNNGVNNVSGKGHSPRRITHGKGGGKEGGSSTSRASHGGEESGPKSNSNASKWLEVSLWETLMAYNGGGGNGSNGEPPESWPGGNGNENGLAVHTPPGPPFAPGINVIRATGPPNGGSGGGGDGEKNAWGGSNLGKDLPSPKEICKGLDKFVIGQKRAKKVLSVAVYNHYKRIYHATLQKGSTVDSEVLDDDDNVDLEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAAADFNVAAAQQGIIYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQMDTKNILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRNGGITDSVVTSSLLESVESADLIAYGLIPEFIGRFPILVSLSALTEDQLMMVLTEPKNALGKQYKKLFSMNNVKLHFTEKALRLIAKKAMSKNTGARGLRALLESILTEAMFEIPDIKTGSDRIDAVVVDEESVGSRTSLGCGGKILRGDGALEQYLDKMKDSAVNVDVGESDLHEGDLELSSRAMSL 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00545 704 Gene3D - 283 558 IPR027417 -
Phco5g00545 704 Gene3D - 559 658 - -
Phco5g00545 704 SMART ClpB_D2_small_2 560 650 IPR019489 -
Phco5g00545 704 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 559 661 - -
Phco5g00545 704 CDD RecA-like_ClpX 290 557 - -
Phco5g00545 704 Pfam AAA domain (Cdc48 subfamily) 349 553 IPR003959 GO:0005524|GO:0016887
Phco5g00545 704 MobiDBLite consensus disorder prediction 90 111 - -
Phco5g00545 704 Pfam C-terminal, D2-small domain, of ClpB protein 560 629 IPR019489 -
Phco5g00545 704 MobiDBLite consensus disorder prediction 90 104 - -
Phco5g00545 704 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 288 645 IPR027417 -
Phco5g00545 704 MobiDBLite consensus disorder prediction 218 287 - -
Phco5g00545 704 MobiDBLite consensus disorder prediction 180 201 - -
Phco5g00545 704 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 283 558 - -
Phco5g00545 704 MobiDBLite consensus disorder prediction 149 201 - -
Phco5g00545 704 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 73 677 - -
Phco5g00545 704 MobiDBLite consensus disorder prediction 149 164 - -
Phco5g00545 704 SMART AAA_5 349 511 IPR003593 GO:0016887
Phco5g00545 704 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 286 652 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00545 Phco-Chr5 5119460 5127747 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00545 5 5119460 5127747 Phco5g00545 5 5119460 5127747 ECH
Phco5g00545 5 5119460 5127747 Phco6g01994 6 39573379 39579454 PCT