Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01507 ATGTCGGCAAGAAGGAACCATAAAATTGATATTTTGTGGGTAAACGAAAAGATTAAGGAGAAAATGAAAGAAATACCACTTCTCCTCTTCCTCTTCCTCTTCTTCCACCTCTACTTCTACCCTCTTCTTCACTCCACACTCTTCTTCTCTCCCACCTTCCTATTTCTCTTTCTTGGAGAGGGGAACAGACCCATGAAGAGGCTAGTACCTGTGCTTTTACTCATAGTATTAAGCACTGCTTTGGGAGGCAAAGATGATCATGGACCGTGTAAACAAGAACTGTTGAATCCTAGGCCTCACAGTGTGTCAATCTTAGAGTTTGGGGCTGTTGGAGATGGAAAAACATTGAACACAGTTGCGTTCCAAAATGCAGTTTTTTATGCCAAGTCATTTGCCGACAAAGGTGGTGCTCAACTATATGTTCCATCTGGAAGATGGCTTACCGGAAGTTTCAACCTTACCAGCCACCTCACTCTCTTCCTTGAAAGCGGAGCAACTATCATTGCATCGCAGGATTATGCACACTGGCCTGCTGTGGATCCCCTACCATCCTATGGTCGGGGAATTGATGTTCCAGGTGGGAGATATTGCAGTTTGATTTATGGACGCAACTTAAGTGATGTGGTGATTACAGGTGACAATGGAATTATTGATGGGCAGGGTTCTGTTTGGTGGGACCTAATCAGAACTCATTCCTTAAATTACAGCAGACCACATATTATAGAACTTGTTGGTTCTGATAATATCGTAATCTCAAATTTGACCTTTTTAAACTCTCCTGCTTGGAGCATCCATCCAGTGTATTGCAGCAATGTTCGAATCCAAAACATAACAGCTCATGCTCCAACTGAGTTCCCTTACACAAGTGGTATAGTTCCAGATTCTTCCGACCATGTTTGCATTGACAACAGCAATATTAGCACTGGTCATGATGCAATTGTGCTGAAGAGTGGTTGGGATCAATATGGAGTTGCCTATGGAAAATCAACCTCAAACGTCCACATCAGGGGTGTTCATTTACAATCATCATCCGGTGCTGGCCTAGCATTTGGAAGCGAGATGTCTGGAGGCATATCTGGTATAATTGTAGAGCACCTCCATATTATAAACTCGACAATTGGCATTGAACTGAAGACAACTAGGGGTCGAGGTGGCTATATGAGAAACATCTTAATTTCTGACACAAAATTGGAAAATATTTACTTGGGTATCGGTATGACTGGATTCTCTGGCTCCCATCCAGATGACAAGTATGATCCTAATGCAGTTCCTGTTGTTGGTAATGTTACTTTTGAGGATGTGATTGGCGCAAATGTTGCTGTTGCTGGGAATTTTTCAGGAATAGTTGATTCACCCTTCACTCCTATCTTTCTTTCAAATGTGACTTTTTCTACTGGTTCTGAGTCATCTTCTTCGTGGTTTTGTTCTAATGTAATGGGAGTCTCTGAGGATGTGTTTCCTGAGCCATGTCCTGACCTGCTGAACACACAGTCAAAATTTTCGTCCAGCTTTTCTTCTCTACATCCATCGTCTAGTTATGTCTCAAGCGCATGA 1554 0.4241 MSARRNHKIDILWVNEKIKEKMKEIPLLLFLFLFFHLYFYPLLHSTLFFSPTFLFLFLGEGNRPMKRLVPVLLLIVLSTALGGKDDHGPCKQELLNPRPHSVSILEFGAVGDGKTLNTVAFQNAVFYAKSFADKGGAQLYVPSGRWLTGSFNLTSHLTLFLESGATIIASQDYAHWPAVDPLPSYGRGIDVPGGRYCSLIYGRNLSDVVITGDNGIIDGQGSVWWDLIRTHSLNYSRPHIIELVGSDNIVISNLTFLNSPAWSIHPVYCSNVRIQNITAHAPTEFPYTSGIVPDSSDHVCIDNSNISTGHDAIVLKSGWDQYGVAYGKSTSNVHIRGVHLQSSSGAGLAFGSEMSGGISGIIVEHLHIINSTIGIELKTTRGRGGYMRNILISDTKLENIYLGIGMTGFSGSHPDDKYDPNAVPVVGNVTFEDVIGANVAVAGNFSGIVDSPFTPIFLSNVTFSTGSESSSSWFCSNVMGVSEDVFPEPCPDLLNTQSKFSSSFSSLHPSSSYVSSA 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01507 517 PANTHER PECTIN LYASE-RELATED 84 502 - -
Phco6g01507 517 Pfam Glycosyl hydrolases family 28 199 479 IPR000743 GO:0004650|GO:0005975
Phco6g01507 517 Gene3D - 91 484 IPR012334 -
Phco6g01507 517 SMART pbh1 246 266 IPR006626 -
Phco6g01507 517 SMART pbh1 358 379 IPR006626 -
Phco6g01507 517 SMART pbh1 269 295 IPR006626 -
Phco6g01507 517 SMART pbh1 296 317 IPR006626 -
Phco6g01507 517 SMART pbh1 330 352 IPR006626 -
Phco6g01507 517 SMART pbh1 387 408 IPR006626 -
Phco6g01507 517 SUPERFAMILY Pectin lyase-like 95 496 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01507 Phco-Chr6 15921613 15925152 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01507 6 15921613 15925152 Phco6g01507 6 15921613 15925152 ECH
Phco2g02410 2 54288728 54292401 Phco6g01507 6 15921613 15925152 PCT