Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01472 ATGGCCGTGACCACTCCCTATCTCAATGCCACAGAAAAAAAGCACTGGTGGCTCACCAACCGTAAGGTTGTTGAGAAATACATCAGAGACGCTCGCTCTCTGATGGCCACGCAGGAACAGAGCGAGATCGCTTCGGCGGTCAACCTTCTCGACGCGGCTCTCGCGATCTATCCGCGGCTCGACGAAGCGCTGGAACTGCGAGCGAGGTCTCTGCTCTGTCTGCGGAGGTTCAAAGAGGTAGCGGATATGCTTCAGGACTACATTCCGAGCTTGAAAATGGCGAACGATGAGTCGGTTTCTTCCGATAGTTCTTCGCAACAACTTTCTAGGGAGGGCGCGAAGCTTCTCTCCTCTGATTCCTCGGCTTCGGATCAGAGTTTCAAGTGTTTCTCTGTCTCTGACTTGAAGAAGAAGGTTATGGCAGGGCTGTGTAAAAGTTGCGACAAGGAAGGGTATTGGAGATACTTGGTTCTGGGGAAAGCATGCTGTCACCTAGGCTTAATGGAAGACGCAATGGTCCTTCTCCAAACGGGTAAAAGGCTAGCCTCCGCCGCATTCCGCCGCGAGAGCGTGTGCTGGTCCGACGACAGCTTCTCCCTCTCGAATCCCCTCTTCTCCGGCGACACAACCCCACCTCGGGCCCCCATGCCGGAATCCGAAGCAGTGACACAACTCCTTGCCCACATAAAGCTCCTTCTCCGTCGCCGTGCCGCCGCGCTCGCTGCTCTGGAAGCCGGCCTCCACTCTGAGGCTATCCGCCACTTCTCCAAAATCGTGGACGGTCGCCGCGGCGCCCCGCAGGCCTTCCTAGCCGAGTGCTACATGCACAGAGCCTCTGCTCACCGCTCCGCCGGCCGAATCGCCGATTCAATCGCCGATTGCAACAGAACCCTTGCCCTGGACCCCACCTGCATCCAAGCGCTGGAAACCCGAGCCTCTATCCTGGAATCCATTCGGTGCTTCCCAGATTCACTCCACGACCTCGAACACCTCAAACTCCTCTACAACACCATCTTGCGCGATCGCAAACTCGCCGGCCCCGCCTGGAAGCGCCAAAATGTGCGCGCCAGAGAAATCCCCGGGAAACTCTGTGCCCTCTCGACCAAGATCCAGGAACTGAAACAGAGGGTGGCTTCGGGAGACACCTCCAACGTGGACTACCACGGTCTCATCGGATTGCGGCGCGGGTGTGGTCGTTCGGAGTTACAGAGAGCGCATTTGCTGCTGTCCCTGAAACACAAGCCCGACAAGGCAATGTGCTTCATCGAGCGGTGCGAGCTGGCGGAGGAGCGCGACCTCGACTCTGTTAAGGAGAGGGCGAGAATGTCGTCGCTCTTGCTCTACAGGCTGCTCCAGAAGGGTTACACCAACGTCATGGGTGCCATAATGGACGAGGAGGTTGCTGAGAAGCAGAGGATGAAAAAGGTTCTGGAAGCTCAGGCCAAAGCCGATAAATTGGAAAACCAAAAGTGCACCGTTTCGTCTCCTTCCACTGCGAATCCCGCGGTTTTTCAGGGTGTCTTTTGCCGCGATCTTGCCGTGGTTGGAAACTTGCTTTCGCAAACGGGATTCAACCGTTCCATTCCGGTCAAGTACGAGGCGTTGAGCTGCTGA 1614 0.5675 MAVTTPYLNATEKKHWWLTNRKVVEKYIRDARSLMATQEQSEIASAVNLLDAALAIYPRLDEALELRARSLLCLRRFKEVADMLQDYIPSLKMANDESVSSDSSSQQLSREGAKLLSSDSSASDQSFKCFSVSDLKKKVMAGLCKSCDKEGYWRYLVLGKACCHLGLMEDAMVLLQTGKRLASAAFRRESVCWSDDSFSLSNPLFSGDTTPPRAPMPESEAVTQLLAHIKLLLRRRAAALAALEAGLHSEAIRHFSKIVDGRRGAPQAFLAECYMHRASAHRSAGRIADSIADCNRTLALDPTCIQALETRASILESIRCFPDSLHDLEHLKLLYNTILRDRKLAGPAWKRQNVRAREIPGKLCALSTKIQELKQRVASGDTSNVDYHGLIGLRRGCGRSELQRAHLLLSLKHKPDKAMCFIERCELAEERDLDSVKERARMSSLLLYRLLQKGYTNVMGAIMDEEVAEKQRMKKVLEAQAKADKLENQKCTVSSPSTANPAVFQGVFCRDLAVVGNLLSQTGFNRSIPVKYEALSC 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01472 537 SUPERFAMILY TPR-like 237 333 IPR011990 GO:0005515
Phco6g01472 537 Coils Coil 469 489 - -
Phco6g01472 537 SMART tpr_5 152 185 IPR019734 GO:0005515
Phco6g01472 537 SMART tpr_5 271 304 IPR019734 GO:0005515
Phco6g01472 537 PANTHER OS01G0273500 PROTEIN 9 537 - -
Phco6g01472 537 Gene3D Tetratricopeptide repeat domain 9 490 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01472 Phco-Chr6 15350536 15352976 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01472 6 15350536 15352976 Phco6g01472 6 15350536 15352976 ECH
Phco2g02431 2 54429498 54433158 Phco6g01472 6 15350536 15352976 PCT