Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01470 ATGGCTTCAATCTTTTCACCACTTACCATTATCTTCTTCTTCCTCCTAGTCCTTTGGGGTGGCGAGGCACGTGACCCTTTTGCGTGTGACCCAAAGAACGCCGCCACAAGGAGCTTACCCTTTTGCAAGGAGTCGCTGGCAATAGCAGAAAGGGTGAAGGACCTGATTGGAAGGTTGACAATGGAAGAAAAGGTGGGCTTGCTAGTGAACAATGCTGCGGCAGTTCCACGGCTTGGAATCAAAGGGTATGAGTGGTGGTCGGAGGCACTGCATGGGGTCTCAAACGTGGGCCCCGGAACCAAGTTTGGCGGCCAGTTCCCCGCCGCCACTAGCTTCCCTCAAGTCATCACCACCGCTGCTTCTTTCAATGCTTCTTTGTGGGAAGCTATTGGACAGGTGGCCTCAGACGAAGCAAGAGCAATGTACAATGGGGGAACGGGTGGGCTTACATACTGGAGCCCAAACGTGAACATTTTTAGAGACCCACGGTGGGGCCGCGGACAGGAGACTCCCGGCGAGGACCCAATACTAGCCGGTAAATATGCGGCCAGTTACGTGAGGGGACTACAGGGGAGCGACGGTAACCGGTTGAAGGTGGCGGCTTCTTGCAAACACTTTACGGCTTATGACCTTGATAATTGGAAGGGTGTGGATCGGTTTCACTTCAATGCAGAGGTTAGCAAGCAGGATATGGAGGATACGTTCAACGTGCCATTCCGAATGTGCGTGAAGGAAGGAAAGGTGGCGAGTGTGATGTGTTCTTACAATCAGGTTAACGGCGTTCCTACCTGTGCAGACCCCATCCTCCTAAACACAACTCTTCGAGGCCTGTGGGGTCTTAATGGCTACATTGTATCAGACTGTGACTCCGTTGGAGTCTTCTACAATGCCCAACATTACACATCTACGCCGGAACAAGCTGCTGCTGCTGCCATTCAAGCAGGTTTGGATTTGGATTGTGGGCCTTTTCTAGCCCAGCACACGCACAATACTGTCAAAAAAGGCCTGTTAAGAGAAGCTCATGTGAATGGGGCCTTGGCCAACACGTTGACGGTCCAAATGAGATTAGGGATGTATGATGGTGAGCAATCAGGTCATCCGTATGCCAATCTTGGGCCAAGAGATGTGTGCACCCCAAGTCACCAAGACCTGGCCCTTGAAGCCGCAAGACAAGGAATTGTCCTACTTAAAAACAAAGGCCCTTCTTTGCCTCTCTCCACAAGGCGTCACCGCACCCTGGCTGTTATTGGGCCCAATTCTAATGCCACTGTCACAATGATTGGAAACTATGCAGGTATTGCTTGCGGATACACTAGCCCTTTGAAGGGAATAGGGAAATACACCAAGACTATTCACGAGCTGGGTTGTTCAAATGTGGCTTGCACAGATGACAAGCAATTCGGGAGAGCTATAAATGCAGCCCAGCAAGCAGATGCAACTGTGCTGGTGATGGGCCTGGATCAGTCCATCGAGGCTGAAACTGTGGACAGGGTTGGCCTGCTTCTTCCTGGTCACCAACAAGACCTTGTGTCGAAAGTAGCATCTGCCTCCAAGGGCCCAACGATTTTGGTCATAATGTCGGGTGGGCCTGTGGATATAACTTTCGCAAAGAATGATCCTAGAATCCAAGGAATCTTTTGGGCCGGTTATCCCGGTCAAGCTGGTGGTGCTGCCATTGCAGATATCTTGTTTGGAACATCAAGCCCTGGAGGGAAGCTACCTATGACATGGTACCCAGAAGGGTACGTTGAAAAGTTGGCAATGACGAATATGGCAATGCGATCAAAGCGATCGAAAGGGTACCCAGGAAGAACCTACAGATTTTACAGTGGCCCAGTGGTGTATCCATTTGGTTACGGATTGTATTACACGCATTTTGTTCATACATTGGTAAGTGCACCCAAAGTGGTATCAGTTCCCGTGGATGGGCACCGACACAACAATAGGTCCAACATTGCCAACAACGCAATTAAAGTGACACATGCCCGATGTGCCAAGCTTTCTATTAGCCTTGAGGTGGACGTTAAAAATGTTGGCTCCAGAGATGCCACGCACACGCTGTTAGTCTTCTCCGCACCACCTGCAGGCAATGCTCATTGGGCTCCACACAAGCACCTTGTGGCTTTCCACAAACTCCATCTTCCTGCCAAGGCCCAACACCGAGTGCGTATCAACATTCACGTTTGCAAGCTCCTCAGTGTGGTTGACAGATCCGGGACTAGGAGAATTCCAATGGGCTTGCACAGTCTTCACATTGCTGATATTAAACACTCTCTCACACTTCACCCACACACACTAGGAATTATCAACTCTTGA 2316 0.5039 MASIFSPLTIIFFFLLVLWGGEARDPFACDPKNAATRSLPFCKESLAIAERVKDLIGRLTMEEKVGLLVNNAAAVPRLGIKGYEWWSEALHGVSNVGPGTKFGGQFPAATSFPQVITTAASFNASLWEAIGQVASDEARAMYNGGTGGLTYWSPNVNIFRDPRWGRGQETPGEDPILAGKYAASYVRGLQGSDGNRLKVAASCKHFTAYDLDNWKGVDRFHFNAEVSKQDMEDTFNVPFRMCVKEGKVASVMCSYNQVNGVPTCADPILLNTTLRGLWGLNGYIVSDCDSVGVFYNAQHYTSTPEQAAAAAIQAGLDLDCGPFLAQHTHNTVKKGLLREAHVNGALANTLTVQMRLGMYDGEQSGHPYANLGPRDVCTPSHQDLALEAARQGIVLLKNKGPSLPLSTRRHRTLAVIGPNSNATVTMIGNYAGIACGYTSPLKGIGKYTKTIHELGCSNVACTDDKQFGRAINAAQQADATVLVMGLDQSIEAETVDRVGLLLPGHQQDLVSKVASASKGPTILVIMSGGPVDITFAKNDPRIQGIFWAGYPGQAGGAAIADILFGTSSPGGKLPMTWYPEGYVEKLAMTNMAMRSKRSKGYPGRTYRFYSGPVVYPFGYGLYYTHFVHTLVSAPKVVSVPVDGHRHNNRSNIANNAIKVTHARCAKLSISLEVDVKNVGSRDATHTLLVFSAPPAGNAHWAPHKHLVAFHKLHLPAKAQHRVRINIHVCKLLSVVDRSGTRRIPMGLHSLHIADIKHSLTLHPHTLGIINS 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01470 771 Gene3D - 51 366 IPR036962 GO:0004553|GO:0005975
Phco6g01470 771 Gene3D Immunoglobulins 647 766 IPR013783 -
Phco6g01470 771 Gene3D - 379 624 IPR036881 GO:0004553|GO:0005975
Phco6g01470 771 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 393 626 IPR036881 GO:0004553|GO:0005975
Phco6g01470 771 FunFam probable beta-D-xylosidase 7 51 365 - -
Phco6g01470 771 PANTHER SUGAR HYDROLASE-RELATED 23 757 IPR044993 GO:0009044|GO:0045493
Phco6g01470 771 SMART Fn3_like_2 685 756 IPR026891 -
Phco6g01470 771 PRINTS Glycosyl hydrolase family 3 signature 199 215 IPR001764 GO:0004553|GO:0005975
Phco6g01470 771 PRINTS Glycosyl hydrolase family 3 signature 112 131 IPR001764 GO:0004553|GO:0005975
Phco6g01470 771 PRINTS Glycosyl hydrolase family 3 signature 273 291 IPR001764 GO:0004553|GO:0005975
Phco6g01470 771 Pfam Fibronectin type III-like domain 687 753 IPR026891 -
Phco6g01470 771 FunFam probable beta-D-xylosidase 2 378 624 - -
Phco6g01470 771 Pfam Glycosyl hydrolase family 3 N terminal domain 105 349 IPR001764 GO:0004553|GO:0005975
Phco6g01470 771 Pfam Glycosyl hydrolase family 3 C-terminal domain 393 623 IPR002772 GO:0004553|GO:0005975
Phco6g01470 771 SUPERFAMILY (Trans)glycosidases 39 392 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01470 Phco-Chr6 15327905 15331655 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01470 6 15327905 15331655 Phco6g01470 6 15327905 15331655 ECH
Phco2g02432 2 54441659 54446455 Phco6g01470 6 15327905 15331655 PCT