Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01466 ATGGAGCTCTCTGTGATTGCAAGAAACATGGAAGAAGTTGTGTTGTTGGTTGATGATTTGAAATTGCTTTCTGGTATTTCTCGCTGCAGAATATGTCATGAAGAGGAATTTGAGAGCACCAAAACCATGGAAGCTCCTTGTGCTTGTTCGGGGACAGTTAAGTTTGCTCATAGAGACTGCATTCAGACGTGGTGCAATGAGAAAGGAAACACAACTTGTGAAATATGTCTCCAGCAATACGAACCTGGATATACAGCAGTTCAGAAGAAATCGCAAATAGCTGATGCAGCAATGACCATTAGGGATAGCCTGCAAATTTCAATGACTGAACGAGAATCGTTAAACACAAGAATAATTGAGGGAAACAATTACTCTGAATGCACATATGCTGCGGATAGAAGCGCAGCTTGTTGTCGATCCCTGGCTTTAGCTTTTACTCTGATCTTGCTTGTAAGACATCTTTTTGCACTCCTTAGTGATGGAATGGAAGATTATCCATTTACAATTCTTACGGTCTTTTTACTGAGGGCCAGTGGAATTATTATACCCATGTACATAATTATTAAGACGATCGGAGCCATACATAATAATATCAAGCGTTACCATCATCAGGATTCTGATGATGACTCATCGATATCAGATGGAGATGATGAAGAAAACGGGACACCAGATGATGCAATTTTAAGACATTCACAATCATAG 702 0.3974 MELSVIARNMEEVVLLVDDLKLLSGISRCRICHEEEFESTKTMEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQQYEPGYTAVQKKSQIADAAMTIRDSLQISMTERESLNTRIIEGNNYSECTYAADRSAACCRSLALAFTLILLVRHLFALLSDGMEDYPFTILTVFLLRASGIIIPMYIIIKTIGAIHNNIKRYHHQDSDDDSSISDGDDEENGTPDDAILRHSQS 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01466 233 FunFam E3 ubiquitin-protein ligase MARCH4 18 86 - -
Phco6g01466 233 ProSiteProfiles Zinc finger RING-type profile. 29 76 IPR001841 -
Phco6g01466 233 MobiDBLite consensus disorder prediction 205 233 - -
Phco6g01466 233 SUPERFAMILY RING/U-box 28 81 - -
Phco6g01466 233 Pfam Protein of unknown function (DUF3675) 82 191 IPR022143 -
Phco6g01466 233 ProSiteProfiles Zinc finger RING-CH-type profile. 21 83 IPR011016 GO:0008270
Phco6g01466 233 SMART ringv_2 28 77 IPR011016 GO:0008270
Phco6g01466 233 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 27 200 IPR033275 -
Phco6g01466 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 87 IPR013083 -
Phco6g01466 233 Pfam RING-variant domain 29 76 IPR011016 GO:0008270
Phco6g01466 233 CDD RING_CH-C4HC3_MARCH 29 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01466 Phco-Chr6 15262190 15264740 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01466 6 15262190 15264740 Phco6g01466 6 15262190 15264740 ECH
Phco2g02435 2 54465114 54467063 Phco6g01466 6 15262190 15264740 PCT